Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01106 ATGGAAGATATTGGATATGTAATGCCCACAGATATCCAGAGGGAAGCTTTGCCTTACCTTTTTTCCGGGCGTGACTGCGTTCTTCATGCTCAGACAGGTTCTGGGAAGACACTCACATACCTGCTTTTGATTAACTCCATCATCAATGCTGCAAAATTCTCTGTGCAAGCCCTAGTCGTTGTGCCCACCCGGGAACTCGGAATGCAAGTCACTAAGGTAGCTAGGACATTGGCTGCAAAGCCAACTGGAGTCGTTGGGGAGCACAAGTCATGTTCCATCATGGCTCTGCTAGATGGAGGAACTCTAAAAAGACACAAGACTTGGTTAAAGGCAGAGCCACCAACAGTAGTTGTTGCAACAGTTGGAAGTTTATGCCAAATGCTTGAAAGACATACTATTTCGCTTCAAACTGTGCGTGTGCTGATTGTTGATGAGGCAAGAGTTGACTGTATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAAATTTTGACTTCATATTCATCTTGCAATAATCGTCAGACAGTCTTTGCCAGTGCGTCTATACCACAGCATAACCGATTTATTCATGACTGTGTGCAGCAAAAATGGACAAAGAGAGATGTGGTCCATATTCATGTCAGTGCTGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAAGATGTGAAACCGAAAGAAAATTAGAAACCCTGTTATCCTTGGTACAATCTGATGCACCTGAATCTGGCATTATATTTGTTGCTGAGCAGTCTGAGAAGTCCAAAAAGTCTGGAAAGGCTCCATCAACATCCCTTCTGATTGACTTTTTGAAGACATCATACCAAGGTGATTTAGATGTCCTCCTCCTTGAAGACAAAATGAATTTCAATTCAAGAGCAGCTTCACTGTTGGAGGTTAGAAAAGGAGGTGGCTATCTTCTTGTAGCAACAGATATAGCTGCGAGGGGGTTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCAAGGACTGCTATTGATTATCTTCATCGAGCAGGCCGAACATGTAGAAAACCCTTTTCTGACATCAATTGTACTGTTACCAGCATTATTGTTCCAGATGAGCGATTTGTTCTCCAGAGGTATGAAAATGAGTTGATGTTCGACTGTGAAGAGCTTATTATTTCATAA 1167 0.4216 MEDIGYVMPTDIQREALPYLFSGRDCVLHAQTGSGKTLTYLLLINSIINAAKFSVQALVVVPTRELGMQVTKVARTLAAKPTGVVGEHKSCSIMALLDGGTLKRHKTWLKAEPPTVVVATVGSLCQMLERHTISLQTVRVLIVDEARVDCIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIPQHNRFIHDCVQQKWTKRDVVHIHVSAVEPMPSRLYHRFIRCETERKLETLLSLVQSDAPESGIIFVAEQSEKSKKSGKAPSTSLLIDFLKTSYQGDLDVLLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGFDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDINCTVTSIIVPDERFVLQRYENELMFDCEELIIS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01106 388 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 17 201 IPR014001 -
Phac3g01106 388 SMART helicmild6 267 351 IPR001650 -
Phac3g01106 388 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 230 388 IPR001650 -
Phac3g01106 388 Gene3D - 216 387 IPR027417 -
Phac3g01106 388 SMART ultradead3 5 222 IPR014001 -
Phac3g01106 388 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 378 - -
Phac3g01106 388 CDD SF2_C_DEAD 220 349 - -
Phac3g01106 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 353 IPR027417 -
Phac3g01106 388 Gene3D - 1 206 IPR027417 -
Phac3g01106 388 CDD DEADc 1 207 - -
Phac3g01106 388 Pfam DEAD/DEAH box helicase 10 185 IPR011545 GO:0003676|GO:0005524
Phac3g01106 388 Pfam Helicase conserved C-terminal domain 230 349 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01106 Phac-Chr3 11051226 11056042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01106 5 373 Eukaryotic Initiation Factors Gene Family AT3G13920 27.297 2.27e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01106 - - gmx:100786205 716.842