Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01001 ATGATTTCCAACCAAATTCACGTGTTTCACTCTGCATTTCGCGTTCTCAGATATCCATGCACAAACTCACCAAACGCGCGTCCTTTGCTTTTGCTTCATCATAACACAAGTGCTTCCTTCTGCCCCTCACCAACCACACTTTGTTCTTCACTCACTGACGATTCCTTTTCCACCCCAAAACCAAACCAGTTGGGCTACAATCCTCCAGAGGAACTGTTCGGGCTGGAGGTGGAGCTCAAACCAAGCAAGGGTAAGTCTCATTCACCAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGGGAGCTACCTTGTCCCAGTTGCCGAGCAAGGGGTTATACACCTTGTACAGAGTGTGGAATAGAAAGATCAAGGCCAGACTGTCCAAAATGTTATGGAAAGGGTATATTGACTTGCTACCAATGCTCTGGAGATCGTGTTATATGGGAGGAATCAATTGATGAAAAACCATGGGAGAGAGCCCATTCTATTTCCCCACTTAAAGTGAAGGAAGATGATGAAGTTGACAAATTAGACATAAAGCTGGATGTGAAGAAAAAATCCAAGCGTGTTTACCACTCACCACCTCCAGAAGTTGGATTAAAGATTAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTGTTTAGCAACCGAATGAAGATTATTCACCAGGATCCCAAGCTTCAGGCACAGCGTGTGGCTGCTATTAAGAAAGCCAAGGGAACTGTTGCAGCAAGAAGGCACACTTCCAAAACTATGAAAGCTTTCTTTAGTGATCCAATAAACAGACAGAAAAGGAGCATAGCCATGAAGGGAGTAAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCATAGGAAACACTACTGTCCGGAACTGAAGAATACCTTGATTGATCGGCGATTCAAGTGTAGGGTGTGTGGGGAAAAAGGCCACAACAGAAGAACATGTAGCAAGATAGGGGTAAGCCATAGCAATGAGAGAATGATAAAACCCCATGAGTGCAGAGTCTGTGGGGAAAAGGGCCACAACAGAAGAACATGTAGGAAGTTAAGGATAAGCCATAGAAAGGGGAGAATGATAAAACAGCGGAAGTGTAAAGTATGTCTCCAATTAGGCCATAACCGTAGGACCTGTCCTGAAGTTGTTCCTAGTAAAAGAAACACGGCCTCTCCAAGGCCATACAAGTGTAGGTTGTGCCAGAAAAAGGGACATAATAGTAGGACATGTCCAAGTAAGACAGTTGTTACTGAACATCCTCAAAATTAA 1281 0.4395 MISNQIHVFHSAFRVLRYPCTNSPNARPLLLLHHNTSASFCPSPTTLCSSLTDDSFSTPKPNQLGYNPPEELFGLEVELKPSKGKSHSPEPRSWFGPNGQYIRELPCPSCRARGYTPCTECGIERSRPDCPKCYGKGILTCYQCSGDRVIWEESIDEKPWERAHSISPLKVKEDDEVDKLDIKLDVKKKSKRVYHSPPPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLQAQRVAAIKKAKGTVAARRHTSKTMKAFFSDPINRQKRSIAMKGVKFYCQNCGREGHRKHYCPELKNTLIDRRFKCRVCGEKGHNRRTCSKIGVSHSNERMIKPHECRVCGEKGHNRRTCRKLRISHRKGRMIKQRKCKVCLQLGHNRRTCPEVVPSKRNTASPRPYKCRLCQKKGHNSRTCPSKTVVTEHPQN* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01001 426 Gene3D - 275 325 - -
Phac3g01001 426 SMART c2hcfinal6 280 296 IPR001878 GO:0003676|GO:0008270
Phac3g01001 426 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Phac3g01001 426 SMART c2hcfinal6 400 416 IPR001878 GO:0003676|GO:0008270
Phac3g01001 426 SMART c2hcfinal6 307 323 IPR001878 GO:0003676|GO:0008270
Phac3g01001 426 SMART c2hcfinal6 369 385 IPR001878 GO:0003676|GO:0008270
Phac3g01001 426 Gene3D - 362 425 - -
Phac3g01001 426 SUPERFAMILY Retrovirus zinc finger-like domains 278 323 IPR036875 GO:0003676|GO:0008270
Phac3g01001 426 ProSiteProfiles Zinc finger CCHC-type profile. 281 296 IPR001878 GO:0003676|GO:0008270
Phac3g01001 426 ProSiteProfiles Zinc finger CCHC-type profile. 339 354 IPR001878 GO:0003676|GO:0008270
Phac3g01001 426 SUPERFAMILY Retrovirus zinc finger-like domains 362 417 IPR036875 GO:0003676|GO:0008270
Phac3g01001 426 ProSiteProfiles Zinc finger CCHC-type profile. 307 323 IPR001878 GO:0003676|GO:0008270
Phac3g01001 426 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 57 322 - -
Phac3g01001 426 Pfam Zinc knuckle 396 415 IPR025829 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01001 370 422 C2H2 Transcription Factor Family AT5G20220 50.000 6.22e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01001 - - var:108323927 773.467