Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac3g00972 | ATGGCTGATCCTCAGAAAACTGCTCTTGGCGAGAGAGATATCGAGCAGGCAATTGCATTTCTCAAGAAAGGCTCATATCTTCTAAAGTACGGACGAAGAGGGAAGCCGAAGTTCTGCCCGTTTAGGCTTTCCAATGATGAGTCTATACTCTTATGGTACTCTGACAAGGAAGAGAAACAGCTTAAACTCAGTACTGTTTCAAGGATCATTCCAGGGCAGCGGACTGCAACATTTCAGCGGTATCCACGACCTGAGAAAGAATATCAATCATTTTCTCTTATATACAGCGATAGGTCCTTGGATTTGATATGCAAGGACAAAGAAGAAGCTGAAATCTGGTTTGTTGGTCTTAAGGCATTAGTTACTCGAGGGAACAATCGCAAGTGGTTTGAGTCAAGAACTGATGACAGTCACTGTTCTGATAGTCCAAAATCTAGCACACGAAGATCCACTCCATCTAATACACCATTTTCTGACCCTGGAGATGCTGGTGGAACTGCTGGTGGAGCTGCTTTTGATGTGAAAAATAGATGGGTAAAGGCTTTCTCTGAAATAATTTCTTCCAATGCAGCAAGCAAGAGTTCCAGTCAAGCTGAATCTATTGCAAACTCCTCCTTGTCCTCTGGGTGTGTGGATAACTCAAGCAATCGAAATTCTGCATCTGAGGCATTTCGAGTTAGTTTGTCTAGTGCTGTAAGTTCCTCCAGCCAGGGTTCTTATCATGAAGATTTTGATTCCTTAAGTGATGTTTTTATTTGGGGAGAAGGTATTGGCAATGGAATTCTTGGTGGAGGTGTACATAGAGTTGGAGCCTTGTCTAGTTCTGAGATGGATGCATTCCTCCCCAAGGCATTCGAATCTAAGTTAGTTCTAGATGTTCACAGTATTAGTTGTGGCTACAGACATGCTGTTCTGGTTACCAAGCAGGGAGAGATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTAGAAATGGATGTTTTTCACCCTAAGCTTGTTGACACTCTTGCTGGCATGAATATTGAGTCAGTAGCATGTGGAGAATATCATACATGCGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTGCTCACAATTCTGGCATGCTTGGACATGGAAATGAAGCCACTCACTGGATTCCTAAGAAAATAAGTGGTAACTTGGAGGGTTTACGTGTATCTTATGTGTCCTGTGGACCTTGGCACACCGCTATTGTTACATCAGCTGGGCAACTGTTCACATTTGGTGATGGAACTTTTGGTGCCTTAGGTCATGGAAATCATAGTAGTGCAACTATTCCTCAAGAAGTAGAAACTTTGAGAGGGTTTAGAACAACCAAGGTCGCATGTGGTGTTTGGCACACTGCTGCAGTTGTGGAGGTGATAAACGAATCTGTGGAATCTTCTACACGCTCATCTAGTGGAAGATTGTTCACCTGGGGTGATGGAGATAAAGGCCAACTTGGACATGCTGATAGGGAGCCTAGACTAGTTCCTGAGTGTGTAATTGCATTGAGTACTGAAAACATTAGCCAGGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACATCAGGACATGTATATACAATAGGAAGCACTGCTTATGGGCAACTTGGCTGTCCTGCATCTGATGGAAAAGTCCCTACATGTGTTAAAATTGCTGACAGTTTTATTGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCTTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTAAATGGGCAATTAGGTCATGGAGACAATGATCACAGGAATAAACCAACACTTGTTGAGTTTTTAAAAGATAAACAAGTGAAAAGTGTATTTTGTGGTTCAAACTTTACAGCTGCTGTATGTCTTCATAAATGGATCCCAAGTGTTGATCATTCTACATGTTTTGGATGTCGTAATCCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTGTTTTGCAAATCTTGCACCAGCAAGAAATCTAGAAAAGCTTCCCTTGCTCCCAATACTAGCAAGCCGTATCGAGTTTGCGAGGACTGTTATCTTAAGCTTAAGAAGCCTGCTGAATCAGTACCCTTGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCAAGAGAATAGAACCACTAAAATACAGGGAACACTATTGAGACTTTCATCTTTTGGTTCTATTCTTCAAACAGAAAGTAGTCAATTGAAGCTTCCAGATTCACAAGATAGCCACCGTTCCCCAGCTTCGAATGGAAAACTAGAGATGAGGGGTGTTGCTTCTTCAAAATCATCAAATTCTGTTTTTGTTGATTCTAAGAAAAACCTTCCATTTTCAGAGCCTGCTGCAAGATTATCTTGTCAATCAACATCTCCAGTTTCGTCGAAGTCAAGTCCAAGAGAATCGTATGAGGATATCAATGATGATTTAAAGCATAGAAATGATATTTTAAGTCAAGAAGTTATAAATTTAAGGACTCAGGTTGAAGATCTTACTCGAAAATCGAAAAGTTTAGAGGCTGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGACTGCAGTAGCTGCAGACGAAGCTGGAAAGTGTAAATCAGCAAAAGAGGTCATAAAATCATTGACTGCACAGTTAAAGGAAATGGTGGAAAGAGTGCCAGAAGGACACAATGATGACTCCAGTACAGAGCTCTCTGCTGAAAACACTAAAAATATTATTGATCATTCCTTAGATGTGAGCCATATAAGAAACAATGCCATTCTAAAAAATGAAGGCAGCAGCAATGTAGCAAATCTGATATTACCTAATGGTGCCAAAACACAAAGTGGGAAGGCAGAGTGGGTAGTGCAAGATGAAACAGGTGTGTTCGTGAGTTTGTCCCCCCTGCCAGGTGGTGGTAATGAGCTTATGCGTGTTCGCTTCAGTCGAAAGCATTTCACAGAAGAAGAGGCTGAAAAGTGGTGGGCAGAAAATGGAACCAAAATATTGGAGCGGCACAATATAGTTGTTTTATAG | 3054 | 0.4149 | MADPQKTALGERDIEQAIAFLKKGSYLLKYGRRGKPKFCPFRLSNDESILLWYSDKEEKQLKLSTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYSDRSLDLICKDKEEAEIWFVGLKALVTRGNNRKWFESRTDDSHCSDSPKSSTRRSTPSNTPFSDPGDAGGTAGGAAFDVKNRWVKAFSEIISSNAASKSSSQAESIANSSLSSGCVDNSSNRNSASEAFRVSLSSAVSSSSQGSYHEDFDSLSDVFIWGEGIGNGILGGGVHRVGALSSSEMDAFLPKAFESKLVLDVHSISCGYRHAVLVTKQGEIFSWGEESGGRLGHGVEMDVFHPKLVDTLAGMNIESVACGEYHTCAVTYSGDLYTWGDGAHNSGMLGHGNEATHWIPKKISGNLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGNHSSATIPQEVETLRGFRTTKVACGVWHTAAVVEVINESVESSTRSSSGRLFTWGDGDKGQLGHADREPRLVPECVIALSTENISQVACGHSLTIALTTSGHVYTIGSTAYGQLGCPASDGKVPTCVKIADSFIEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVEFLKDKQVKSVFCGSNFTAAVCLHKWIPSVDHSTCFGCRNPFNFRRKRHNCYNCGLVFCKSCTSKKSRKASLAPNTSKPYRVCEDCYLKLKKPAESVPLVQTPSLRSVSLQENRTTKIQGTLLRLSSFGSILQTESSQLKLPDSQDSHRSPASNGKLEMRGVASSKSSNSVFVDSKKNLPFSEPAARLSCQSTSPVSSKSSPRESYEDINDDLKHRNDILSQEVINLRTQVEDLTRKSKSLEAELERTSKQLKEVTAVAADEAGKCKSAKEVIKSLTAQLKEMVERVPEGHNDDSSTELSAENTKNIIDHSLDVSHIRNNAILKNEGSSNVANLILPNGAKTQSGKAEWVVQDETGVFVSLSPLPGGGNELMRVRFSRKHFTEEEAEKWWAENGTKILERHNIVVL* | 1018 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac3g00972 | 1017 | SMART | PH_update | 21 | 124 | IPR001849 | - | |
| Phac3g00972 | 1017 | Coils | Coil | 814 | 869 | - | - | |
| Phac3g00972 | 1017 | MobiDBLite | consensus disorder prediction | 131 | 166 | - | - | |
| Phac3g00972 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 248 | 309 | IPR000408 | - | |
| Phac3g00972 | 1017 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 296 | 306 | IPR000408 | - | |
| Phac3g00972 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 534 | 583 | IPR000408 | - | |
| Phac3g00972 | 1017 | CDD | FYVE_like_SF | 645 | 698 | - | - | |
| Phac3g00972 | 1017 | CDD | PH_PLC_plant-like | 12 | 122 | - | - | |
| Phac3g00972 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 362 | 416 | IPR000408 | - | |
| Phac3g00972 | 1017 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 455 | 465 | IPR000408 | - | |
| Phac3g00972 | 1017 | MobiDBLite | consensus disorder prediction | 747 | 763 | - | - | |
| Phac3g00972 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 417 | 468 | IPR000408 | - | |
| Phac3g00972 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 419 | 433 | IPR000408 | - | |
| Phac3g00972 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 312 | 328 | IPR000408 | - | |
| Phac3g00972 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 523 | 541 | IPR000408 | - | |
| Phac3g00972 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 579 | 600 | IPR000408 | - | |
| Phac3g00972 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 362 | 378 | IPR000408 | - | |
| Phac3g00972 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 403 | 419 | IPR000408 | - | |
| Phac3g00972 | 1017 | Pfam | Transcription factor BRX N-terminal domain | 872 | 902 | IPR027988 | - | |
| Phac3g00972 | 1017 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 643 | 709 | IPR013083 | - | |
| Phac3g00972 | 1017 | ProSiteProfiles | BRX domain profile. | 958 | 1013 | IPR013591 | - | |
| Phac3g00972 | 1017 | SUPERFAMILY | RCC1/BLIP-II | 248 | 637 | IPR009091 | - | |
| Phac3g00972 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 310 | 361 | IPR000408 | - | |
| Phac3g00972 | 1017 | SUPERFAMILY | FYVE/PHD zinc finger | 636 | 711 | IPR011011 | - | |
| Phac3g00972 | 1017 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 957 | 1012 | IPR013591 | - | |
| Phac3g00972 | 1017 | MobiDBLite | consensus disorder prediction | 796 | 814 | - | - | |
| Phac3g00972 | 1017 | Pfam | FYVE zinc finger | 636 | 702 | IPR000306 | GO:0046872 | |
| Phac3g00972 | 1017 | Coils | Coil | 877 | 897 | - | - | |
| Phac3g00972 | 1017 | SMART | fyve_4 | 632 | 703 | IPR000306 | GO:0046872 | |
| Phac3g00972 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 482 | 533 | IPR000408 | - | |
| Phac3g00972 | 1017 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 57 | 892 | - | - | |
| Phac3g00972 | 1017 | MobiDBLite | consensus disorder prediction | 795 | 819 | - | - | |
| Phac3g00972 | 1017 | SUPERFAMILY | PH domain-like | 13 | 121 | - | - | |
| Phac3g00972 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 310 | 358 | IPR000408 | - | |
| Phac3g00972 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 481 | 530 | IPR000408 | - | |
| Phac3g00972 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 585 | 632 | IPR000408 | - | |
| Phac3g00972 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 533 | 580 | IPR000408 | - | |
| Phac3g00972 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 417 | 465 | IPR000408 | - | |
| Phac3g00972 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 361 | 412 | IPR000408 | - | |
| Phac3g00972 | 1017 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 640 | 702 | IPR017455 | - | |
| Phac3g00972 | 1017 | MobiDBLite | consensus disorder prediction | 144 | 160 | - | - | |
| Phac3g00972 | 1017 | Gene3D | - | 13 | 128 | IPR011993 | - | |
| Phac3g00972 | 1017 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 219 | 470 | - | - | |
| Phac3g00972 | 1017 | MobiDBLite | consensus disorder prediction | 747 | 780 | - | - | |
| Phac3g00972 | 1017 | Pfam | Pleckstrin homology domain | 15 | 121 | IPR001849 | - | |
| Phac3g00972 | 1017 | Gene3D | - | 476 | 642 | IPR009091 | - | |
| Phac3g00972 | 1017 | Gene3D | - | 175 | 475 | IPR009091 | - | |
| Phac3g00972 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 584 | 635 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac3g00972 | Phac-Chr3 | 8874095 | 8894963 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac3g00972 | 956 | 1014 | Major Intrinsic Protein MIP | AT1G31880 | 47.458 | 4.80e-13 | 70.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac3g00972 | - | - | pvu:PHAVU_003G066900g | 1644.4 |