LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac3g00923	ATGGCTTCTTTCACTCCTCTTCTTCCATTTCTTTTACCTTTGCTGACAACTTCTTTTCCTACAGTTTTTGCCTTTGAGGTCTCAATCAAAGCTACTAATTTGTCTCCTTTAAATTGCTCTGCTAAGATCACAACATGTAATGCCTCACTCTACCACATATCCCATAATCTCACCATTCACCAAATAGCCTCCTTTTACTCGGTTACTTCTTCCCATATCACACCCATAAAGCATGGCATCAAACAAGACTACCTCCTCAGAGTACCCTGTTCTTGCAAACATACAAGTGACCTTAGCGGATATTTCTATGACACCACCTACAAAGTAAGGCCACATGACACTTTTTCCAATATTTCAAACCTGGTTTTCAGTGGCCAAGCTTGGCCAGTTAATGGTACATTGCACCCAGATGAGAATTTAGCAATACACATTCCATGTGGGTGCTCACAAAGTGACTCTCAAATAGTTGTCACCTATACAGTTCAGCCAAATGATACCCCAACACTGATCGCGAATCTGCTAAATGCTTCACTGGCTGACATGCTGAGCATGAACAAGATTCTGGATCCGAACTTTAAATTCATCGATGTTGGTTGGGTGCTATTTGTTCCCAAAGGATCCAAAGGGCTATTACCTAGTACTGCTGCTGACAATGAAGAAAAGAAACTTAAGTGGGCAACAACAATAATTGGTATCTTAGCGGGAGTGACATTCCTTTCAGTTGTTACAACTATCATTCTCATTGTCAGAGTAAATAAAGAGAATCAAATGAACAGTGAAGATTCACGCCTTATCTCTAGAAGATCAATTGCCAATAGAACTATTTCCTCATCAAAGTATAACTTTCAAAAAGAATATATAGAAGATGTTATTTCATTAGAATCAGAAAGACCAATAGCATATAATCTTGAGGTGATTGAAGAGGCTACGAATAACTTTGATGAAAGTCGAAGAATAGGAAGTGGTGGATATGGAAGTGTTTATTATGGAGTGTTAGGGAACAAGGAGGTGGCTGTGAAGAAAATGAGGTCCAATAAATCTAAAGAGTTCTATGCAGAACTCAAGGTCTTATGCAAAATCCACCATATCAACATTGTGGAGCTGTTGGGATATGCCAACGGAGAAGATGACCTCTATTTGGTGTATGAGTACGTTCCAAATGGATCTCTCAGTGATCATCTTCATGACCCATTACTGAAAGGGAACCAGCCTCTTTCTTGGACTGTTAGGGTTCAAATTGCACTGGATGCTGCAAAAGGTCTTGAATATATACATGACTATACAAAAGCACGCTGTGTGCACCGTGACATAAAGAGTAGCAACATTCTACTTAATGACAAGTTCAGAGCAAAGGTGGGAGATTTTGGACTTGCAAAGCTAGTAGATCGAACCGATGATGAAAATTTTATAGCAACCAGGCTTGTAGGAACACCAGGCTACCTTCCACCAGAATCTCTGAAGGAACTTCAAGTGACCCCAAAAGCCGATGTGTTTGCGTTTGGAGTGGTACTTTCGGAGCTGTTAACAGGGAAACGAGCATTATTTCGAGAAAGCCAAGAAGAGATTAAAATGAAATCACTCATCAGTGTTGTTAATAAAATATTCCAAGATGATGACCCAGAGATTGCCTTAGAAGATGCCATAGATAAGAATCTTGAAGCAAGCTATCCGATGGAAGATGTCTACAAGATGGCAGAAATAGCTGAGTGGTGCTTGCAAGAAGATCCAATAGAAAGGCCTGAAATGAGGGATATAATTGGGGCACTGTCACAGATTGTGATGTCCTCAACAGAGTGGGAAGCATCCCTATGTGGAAATAGCCAGGTCTTCAGCGGGCTGTACAGTGGAAGATGA	1854	0.4051	MASFTPLLPFLLPLLTTSFPTVFAFEVSIKATNLSPLNCSAKITTCNASLYHISHNLTIHQIASFYSVTSSHITPIKHGIKQDYLLRVPCSCKHTSDLSGYFYDTTYKVRPHDTFSNISNLVFSGQAWPVNGTLHPDENLAIHIPCGCSQSDSQIVVTYTVQPNDTPTLIANLLNASLADMLSMNKILDPNFKFIDVGWVLFVPKGSKGLLPSTAADNEEKKLKWATTIIGILAGVTFLSVVTTIILIVRVNKENQMNSEDSRLISRRSIANRTISSSKYNFQKEYIEDVISLESERPIAYNLEVIEEATNNFDESRRIGSGGYGSVYYGVLGNKEVAVKKMRSNKSKEFYAELKVLCKIHHINIVELLGYANGEDDLYLVYEYVPNGSLSDHLHDPLLKGNQPLSWTVRVQIALDAAKGLEYIHDYTKARCVHRDIKSSNILLNDKFRAKVGDFGLAKLVDRTDDENFIATRLVGTPGYLPPESLKELQVTPKADVFAFGVVLSELLTGKRALFRESQEEIKMKSLISVVNKIFQDDDPEIALEDAIDKNLEASYPMEDVYKMAEIAEWCLQEDPIERPEMRDIIGALSQIVMSSTEWEASLCGNSQVFSGLYSGR*	618

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac3g00923	617	Pfam	LysM domain	159	204	IPR018392	-
	Phac3g00923	617	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	35	611	IPR044812	GO:0019199\|GO:0045087
	Phac3g00923	617	CDD	LysM	157	203	IPR018392	-
	Phac3g00923	617	SMART	serkin_6	313	593	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac3g00923	617	SUPERFAMILY	LysM domain	157	204	IPR036779	-
	Phac3g00923	617	Gene3D	LysM domain	149	210	IPR036779	-
	Phac3g00923	617	SUPERFAMILY	Protein kinase-like (PK-like)	297	589	IPR011009	-
	Phac3g00923	617	Gene3D	Phosphorylase Kinase; domain 1	292	384	-	-
	Phac3g00923	617	FunFam	PTI1-like tyrosine-protein kinase 3	385	603	-	-
	Phac3g00923	617	FunFam	Kinase family protein	289	384	-	-
	Phac3g00923	617	ProSitePatterns	Protein kinases ATP-binding region signature.	319	341	IPR017441	GO:0005524
	Phac3g00923	617	ProSiteProfiles	LysM domain profile.	157	203	IPR018392	-
	Phac3g00923	617	Gene3D	Transferase(Phosphotransferase) domain 1	385	607	-	-
	Phac3g00923	617	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	432	444	IPR008271	GO:0004672\|GO:0006468
	Phac3g00923	617	Pfam	Protein kinase domain	314	585	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac3g00923	617	ProSiteProfiles	Protein kinase domain profile.	313	594	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac3g00923	617	SMART	LysM_2	158	204	IPR018392	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac3g00923	Phac-Chr3	8367171	8371576	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac3g00923	293	617	Receptor kinase-like Gene Family	AT1G51940	51.360	2.94e-112	348

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Phac3g00923		Pkinase	1.3e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac3g00923	-		-	gmx:100791718	1005.74