Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00880 ATGAGTGGTTTGGGTGTAGTAGAGTGGCTTAGACCCCTTGTTGAGACCAATATTTGGGATTATGTAGTTGTTTGGAAATATGGGGATGATCCAACTAGGTTTATTGAGTGGATAGGTTGCTGTTGTAGAGGAAGTTGCAGCGTGAACCTTGGTGTGATGTCCAAAGAGGAAAAGGGTGAAGTATGTCACTTAGCTCCCATTTGCAGGGATAAGTATCTTCAGCATCATGTTAGAACAAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTTTTGCATTGTCTCTCTATTCTGGTGTGCATGGAGAGGTTGCCATATCACAACAATCAAGATGGCTTACCAAGGATTCAATTGGAACCCAAGTTTTGATCCCTATTGTTGGTGGTCTTATTGAGCTCTTCACTGAAAAGCTGATTCCAATGGATATGAATATCATAGAGTTAATAACAGCACATGGCTGTGTCTCTTTAAAGCAAGAAGCCATATCTGCACAGAGCTACACCTGTCTCAACATCATTGAACATCTGCCATTACCGGAACAGTACTCACTTAGGTGGCTACCACACATGTCAGCAACTTTAACTCCTAGTATTCATCAGCCTGCAACAAAACAGTGCACCTCCCATCCTAGCATTGAAGGACCCCCCAGTGGGTCTAATCCTTCAATTGAAGAACTATCATTTGATTCAAAATTTGTTGGTTTGATTCCAGATGAGCATCTTAAACAATCAGCTAAAATGTCTCCCATCCCCAAAACTAAAATGTCCAAGTACAATAAAACTTCAGGGAAACAGCAGAGAGGTTTGAGTTCTCATTGCAGCGATGGGGAAGAAGATAAATCAAAACTGGTCAAGGAGCCACAGAAGGAAGGGTACCAAGCCAAAAATCTTGTCACAGAGAGGAATAGGAGGAAAAAGATTAAAAATGGGCTTTTTACTCTGCGGTCTCTAGTCCCAAAGATAACCAAGATGGACAGAGCTGCAATTCTTGCAGACGCAGTTGACTATATAAAGGAATTACAAACACAAATGAAAGAACTCAAAGATGAGGTCAGGGCTTTGGAAGTACAGGACCGTGAGAAGAACACACCACAACTGAGGAAAGCAGCTGTCAATGAACGAGAAGGAACCAGAAGTAGCACTCTTAATCAAAGTTCTTCTGACTGCACTAAAAAGATGCAGATGGAGGTACAAAGACTTTCCATAACTTACTAA 1209 0.4185 MSGLGVVEWLRPLVETNIWDYVVVWKYGDDPTRFIEWIGCCCRGSCSVNLGVMSKEEKGEVCHLAPICRDKYLQHHVRTKACEALAQLPFALSLYSGVHGEVAISQQSRWLTKDSIGTQVLIPIVGGLIELFTEKLIPMDMNIIELITAHGCVSLKQEAISAQSYTCLNIIEHLPLPEQYSLRWLPHMSATLTPSIHQPATKQCTSHPSIEGPPSGSNPSIEELSFDSKFVGLIPDEHLKQSAKMSPIPKTKMSKYNKTSGKQQRGLSSHCSDGEEDKSKLVKEPQKEGYQAKNLVTERNRRKKIKNGLFTLRSLVPKITKMDRAAILADAVDYIKELQTQMKELKDEVRALEVQDREKNTPQLRKAAVNEREGTRSSTLNQSSSDCTKKMQMEVQRLSITY* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00880 402 MobiDBLite consensus disorder prediction 196 221 - -
Phac3g00880 402 MobiDBLite consensus disorder prediction 269 287 - -
Phac3g00880 402 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 148 IPR025610 -
Phac3g00880 402 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 205 396 - -
Phac3g00880 402 MobiDBLite consensus disorder prediction 373 388 - -
Phac3g00880 402 MobiDBLite consensus disorder prediction 356 372 - -
Phac3g00880 402 Pfam Helix-loop-helix DNA-binding domain 296 339 IPR011598 GO:0046983
Phac3g00880 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 338 IPR011598 GO:0046983
Phac3g00880 402 MobiDBLite consensus disorder prediction 252 268 - -
Phac3g00880 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 289 355 IPR036638 GO:0046983
Phac3g00880 402 MobiDBLite consensus disorder prediction 241 288 - -
Phac3g00880 402 Gene3D - 282 356 IPR036638 GO:0046983
Phac3g00880 402 MobiDBLite consensus disorder prediction 356 388 - -
Phac3g00880 402 Coils Coil 328 355 - -
Phac3g00880 402 SMART finulus 295 344 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00880 Phac-Chr3 7782401 7785837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00880 6 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 32.995 1.42e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac3g00880 bHLH-MYC_N 1.6e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00880 - - gmx:100807261 620.157