Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00879 ATGAGTGGTTTGGGTGTAGTAGAGTGGCTTAGACCCCTTGTTGAGACCAATATTTGGGATTATGTAGTTGTTTGGAAATATGGGGATGATCCAACTAGGTTTATTGAGTGGATAGGTTGCTGTTGTAGAGGAAGTTGCAGCGTGAACCTTGGTGTGATGTCCAAAGAGGAAAAGGGTGAAGTATGTCACTTAGCTCCCATTTGCAGGGATAAGTATCTTCAGCATCATGTTAGAACAAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTTTTGCATTGTCTCTCTATTCTGGTGTGCATGGAGAGGTTGCCATATCACAACAATCAAGATGGCTTACCAAGGATTCAATTGGAACCCAAGTTTTGATCCCTATTGTTGGTGGTCTTATTGAGCTCTTCACTGAAAAGCTGATTCCAATGGATATGAATATCATAGAGTTAATAACAGCACATGGCTGTGTCTCTTTAAAGCAAGAAGCCATATCTGCACAGAGCTACACCTGTCTCAACATCATTGAACATCTGCCATTACCGGAACAGTACTCACTTAGGTGGCTACCACACATGTCAGCAACTTTAACTCCTAGTATTCATCAGCCTGCAACAAAACAGTGCACCTCCCATCCTAGCATTGAAGGACCCCCCAGTGGGTCTAATCCTTCAATTGAAGAACTATCATTTGATTCAAAATTTGTTGGTTTGATTCCAGATGAGCATCTTAAACAATCAGCTAAAATGTCTCCCATCCCCAAAACTAAAATGTCCAAGTACAATAAAACTTCAGGGAAACAGCAGAGAGGTTTGAGTTCTCATTGCAGCGATGGGGAAGAAGATAAATCAAAACTGGTCAAGGAGCCACAGAAGGAAGGGTACCAAGCCAAAAATCTTGTCACAGAGAGGAATAGGAGGAAAAAGATTAAAAATGGGCTTTTTACTCTGCGGTCTCTAGTCCCAAAGATAACCAAGATGGACAGAGCTGCAATTCTTGCAGACGCAGTTGACTATATAAAGGAATTACAAACACAAATGAAAGAACTCAAAGATGAGGTCAGGGCTTTGGAAGTACAGGACCGTGAGAAGAACACACCACAACTGAGGAAAGCAGCTGTCAATGAACGAGAAGGAACCAGAAGTAGCACTCTTAATCAAAGTTCTTCTGACTGCACTAAAAAGATGCAGATGGAGAAGGTTCAAGTAGAAGTGCACCACATTAGCAAGAAAGATTTCTTAGTTAAGTTATACTGTGAGCAGAAGCAAGGTAGATTCTCAAAGTTGATGGAAGCTATACATTCAATTGGACTGCAGGTGGCTAGTGCCAATATAGTGACATTTGATGCTAAAGTCCTGAACATTCTGACGGTTAAGGCAACCAATAAGGATATTCACCCAACTAAACTGAAAGAGTATTTAATACAGAAGACAAGTGATGATAGACAAAGTAGGTAA 1443 0.4123 MSGLGVVEWLRPLVETNIWDYVVVWKYGDDPTRFIEWIGCCCRGSCSVNLGVMSKEEKGEVCHLAPICRDKYLQHHVRTKACEALAQLPFALSLYSGVHGEVAISQQSRWLTKDSIGTQVLIPIVGGLIELFTEKLIPMDMNIIELITAHGCVSLKQEAISAQSYTCLNIIEHLPLPEQYSLRWLPHMSATLTPSIHQPATKQCTSHPSIEGPPSGSNPSIEELSFDSKFVGLIPDEHLKQSAKMSPIPKTKMSKYNKTSGKQQRGLSSHCSDGEEDKSKLVKEPQKEGYQAKNLVTERNRRKKIKNGLFTLRSLVPKITKMDRAAILADAVDYIKELQTQMKELKDEVRALEVQDREKNTPQLRKAAVNEREGTRSSTLNQSSSDCTKKMQMEKVQVEVHHISKKDFLVKLYCEQKQGRFSKLMEAIHSIGLQVASANIVTFDAKVLNILTVKATNKDIHPTKLKEYLIQKTSDDRQSR* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00879 480 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 148 IPR025610 -
Phac3g00879 480 MobiDBLite consensus disorder prediction 196 221 - -
Phac3g00879 480 MobiDBLite consensus disorder prediction 269 287 - -
Phac3g00879 480 MobiDBLite consensus disorder prediction 357 372 - -
Phac3g00879 480 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 289 355 IPR036638 GO:0046983
Phac3g00879 480 MobiDBLite consensus disorder prediction 373 388 - -
Phac3g00879 480 Pfam Helix-loop-helix DNA-binding domain 296 339 IPR011598 GO:0046983
Phac3g00879 480 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 338 IPR011598 GO:0046983
Phac3g00879 480 MobiDBLite consensus disorder prediction 252 268 - -
Phac3g00879 480 Gene3D - 282 356 IPR036638 GO:0046983
Phac3g00879 480 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 206 471 - -
Phac3g00879 480 MobiDBLite consensus disorder prediction 357 388 - -
Phac3g00879 480 MobiDBLite consensus disorder prediction 241 288 - -
Phac3g00879 480 Coils Coil 328 355 - -
Phac3g00879 480 SMART finulus 295 344 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00879 Phac-Chr3 7782401 7785837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00879 6 473 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 31.977 9.01e-68 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac3g00879 bHLH-MYC_N 2.1e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00879 - - gsj:114423672 744.577