Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00878 ATGGATATGAATATCATAGAGTTAATAACAGCACATGGCTGTGTCTCTTTAAAGCAAGAAGCCATATCTGCACAGAGCTACACCTGTCTCAACATCATTGAACATCTGCCATTACCGGAACAGTACTCACTTAGGTGGCTACCACACATGTCAGCAACTTTAACTCCTAGTATTCATCAGCCTGCAACAAAACAGTGCACCTCCCATCCTAGCATTGAAGGACCCCCCAGTGGGTCTAATCCTTCAATTGAAGAACTATCATTTGATTCAAAATTTGTTGGTTTGATTCCAGATGAGCATCTTAAACAATCAGCTAAAATGTCTCCCATCCCCAAAACTAAAATGTCCAAGTACAATAAAACTTCAGGGAAACAGCAGAGAGGTTTGAGTTCTCATTGCAGCGATGGGGAAGAAGATAAATCAAAACTGGTCAAGGAGCCACAGAAGGAAGGGTACCAAGCCAAAAATCTTGTCACAGAGAGGAATAGGAGGAAAAAGATTAAAAATGGGCTTTTTACTCTGCGGTCTCTAGTCCCAAAGATAACCAAGATGGACAGAGCTGCAATTCTTGCAGACGCAGTTGACTATATAAAGGAATTACAAACACAAATGAAAGAACTCAAAGATGAGGTCAGGGCTTTGGAAGTACAGGACCGTGAGAAGAACACACCACAACTGAGGAAAGCAGCTGTCAATGAACGAGAAGGAACCAGAAGTAGCACTCTTAATCAAAGTTCTTCTGACTGCACTAAAAAGATGCAGATGGAGAAGGTTCAAGTAGAAGTGCACCACATTAGCAAGAAAGATTTCTTAGTTAAGTTATACTGTGAGCAGAAGCAAGGTAGATTCTCAAAGTTGATGGAAGCTATACATTCAATTGGACTGCAGGTGGCTAGTGCCAATATAGTGACATTTGATGCTAAAGTCCTGAACATTCTGACGGTTAAGGCAACCAATAAGGATATTCACCCAACTAAACTGAAAGAGTATTTAATACAGAAGACAAGTGATGATAGACAAAGTAGGTAA 1029 0.4052 MDMNIIELITAHGCVSLKQEAISAQSYTCLNIIEHLPLPEQYSLRWLPHMSATLTPSIHQPATKQCTSHPSIEGPPSGSNPSIEELSFDSKFVGLIPDEHLKQSAKMSPIPKTKMSKYNKTSGKQQRGLSSHCSDGEEDKSKLVKEPQKEGYQAKNLVTERNRRKKIKNGLFTLRSLVPKITKMDRAAILADAVDYIKELQTQMKELKDEVRALEVQDREKNTPQLRKAAVNEREGTRSSTLNQSSSDCTKKMQMEKVQVEVHHISKKDFLVKLYCEQKQGRFSKLMEAIHSIGLQVASANIVTFDAKVLNILTVKATNKDIHPTKLKEYLIQKTSDDRQSR* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00878 342 MobiDBLite consensus disorder prediction 103 150 - -
Phac3g00878 342 Gene3D - 144 218 IPR036638 GO:0046983
Phac3g00878 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Phac3g00878 342 SMART finulus 157 206 IPR011598 GO:0046983
Phac3g00878 342 MobiDBLite consensus disorder prediction 114 130 - -
Phac3g00878 342 Coils Coil 190 217 - -
Phac3g00878 342 MobiDBLite consensus disorder prediction 219 234 - -
Phac3g00878 342 MobiDBLite consensus disorder prediction 235 250 - -
Phac3g00878 342 Pfam Helix-loop-helix DNA-binding domain 158 201 IPR011598 GO:0046983
Phac3g00878 342 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 73 333 - -
Phac3g00878 342 MobiDBLite consensus disorder prediction 131 149 - -
Phac3g00878 342 MobiDBLite consensus disorder prediction 219 250 - -
Phac3g00878 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 217 IPR036638 GO:0046983
Phac3g00878 342 MobiDBLite consensus disorder prediction 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00878 Phac-Chr3 7782401 7785837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00878 130 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 37.900 2.48e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac3g00878 HLH 4.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00878 - - gsj:114423672 507.294