Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00848 ATGGACTTCTCGAAGAAGCGCAAGACCGAAGAGAACGGGGATGCTGATTCTCTGTCGTCACCACCCTCACAAGCATTCCCCACCGCCACCGTCCCCACAACCGTCCCCACAACCGCCCCCCTGGCCGCGGAAGACATCCGCAAGATCTTGCGTCCGTTTTCCCAGGAACAGCTCCTCGACCTCCTCCAATCAGCGTCGCTCCGCCACTCCGACGTCCTCGATGCCGTGCGCGCCGTCGCGGACCGCGACTCCACCCTCCGAAAGCTATTCGTACGTGGACTTGCCGGCGAAACCACAAGCGAGACCCTGCGGAGCGTGTTCTCAGCGTTCGGCGAACTCGACGAGGCCATCGTGATCTTCGACAAGGCCACGGGACGCTCTAAGGGCTATGGCTTCGTGGTGTTCCGCCACGTGGACGGCGCTATCCTAGCGCTGAAGGACCCCAGCAAGAAGATCGACGGCCGCATGACGGTCACGCAACTCGCCGCGGCTGGTGGGCCTGGGGGCTCCGGGGACGTTTCGGCGAGGAAAGTTTTCGTCGGGAACGTTCCATTCGAGATCTCATCGGATAAACTATTGAGCGAGTTCCTCAAGTTCGGAGAGGTCGAGGAAGGGCCTCTAGGGTTTGACAAATCCAGCGGCAAATCGAGGGGTTTCGCTTTCTTCGTTTATAAGACAGAGGAAGGTGCGAGGGCTTCGTTGCAGGAACCTGTTAAGACCATTGATGGGCACCAAGTGATTTGCAAATTGGCTGTTGATAGCAAAAAGACGAAACCCTTTGGAGGGGATCATCAACAGCATCAACACACGCAGCAGCAGCAACATCCGCAGCAACAGATGCAACAAGGTCCTATGATGGTACCTCATTATGGTGGATATGGTGGGAATGGCTATGGAATACAGCAGCCGGTGCCACCGTATAACAATCCGGTTCAGGTTTCTGGTGGTGGTGGGTATGGCCATGGAATTGGTGGTGGATATGGTAATTCGCAGATGGGTGGGCCGGTTTCCGGTGACTATGGTACTAGATTGCCTCCCAATTCTGGTGGGGGATTCCCTGAAGGCTCCCAGTATGGCTACCCTGCTTCTTCCACGCTTCCACCGCAGCAGCAAGTGCCATTGCCGAGACCTCCTCCTGGAGGGATGTACCAAGGCGTGCCACCCTATTATTGA 1173 0.5703 MDFSKKRKTEENGDADSLSSPPSQAFPTATVPTTVPTTAPLAAEDIRKILRPFSQEQLLDLLQSASLRHSDVLDAVRAVADRDSTLRKLFVRGLAGETTSETLRSVFSAFGELDEAIVIFDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTVTQLAAAGGPGGSGDVSARKVFVGNVPFEISSDKLLSEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLQEPVKTIDGHQVICKLAVDSKKTKPFGGDHQQHQHTQQQQHPQQQMQQGPMMVPHYGGYGGNGYGIQQPVPPYNNPVQVSGGGGYGHGIGGGYGNSQMGGPVSGDYGTRLPPNSGGGFPEGSQYGYPASSTLPPQQQVPLPRPPPGGMYQGVPPYY* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00848 390 Gene3D - 78 165 IPR012677 -
Phac3g00848 390 MobiDBLite consensus disorder prediction 368 390 - -
Phac3g00848 390 MobiDBLite consensus disorder prediction 330 390 - -
Phac3g00848 390 PANTHER GEO13361P1-RELATED 66 316 - -
Phac3g00848 390 MobiDBLite consensus disorder prediction 264 284 - -
Phac3g00848 390 Gene3D - 170 294 IPR012677 -
Phac3g00848 390 MobiDBLite consensus disorder prediction 1 34 - -
Phac3g00848 390 SMART rrm1_1 88 160 IPR000504 GO:0003723
Phac3g00848 390 SMART rrm1_1 177 249 IPR000504 GO:0003723
Phac3g00848 390 FunFam UBP1-associated protein 2C isoform A 70 172 - -
Phac3g00848 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 245 IPR000504 GO:0003723
Phac3g00848 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 155 IPR000504 GO:0003723
Phac3g00848 390 MobiDBLite consensus disorder prediction 15 34 - -
Phac3g00848 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 257 IPR000504 GO:0003723
Phac3g00848 390 SUPERFAMILY RNA-binding domain, RBD 81 166 IPR035979 GO:0003676
Phac3g00848 390 MobiDBLite consensus disorder prediction 257 284 - -
Phac3g00848 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Phac3g00848 390 SUPERFAMILY RNA-binding domain, RBD 173 268 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00848 Phac-Chr3 7457160 7461834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00848 159 251 C2H2 Transcription Factor Family AT2G19380 31.183 1.89e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00848 K12741 - gmx:100816590 546.584