Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00821 ATGAGTATATCTGGATTCAAATTCCTTCTGGATCTGGATGTACTTGTTTCCCTTATTCCAGTCTCTGACGAAAGATATCAAACAATGAGTAGAGGTGGAAAAAACATGATATTGGAAGTCGTGGAATATTTAAAAGAAGTGCAAATGAGATTTGAAGACAAGGAAAAGAAAAAGTTCGTGGAGTTTTTGAAGATCATAAACGATTATAGAGTTCGCAGAATGACTATTGGGAGTGTGGTAGAAAAAGTGAAGGAATTTCTTAAAGACCACCATGATCTCCTTTCTGGATTTAACAACTTTTTGCCAAAGGGATATGAAATCCTTCTTCCACCTAAGGGTCCAGTCCAGTTGGAAGATGCTATCAAATATGTGCAGAAGGTTAAGGATCGATTTGAAGACACAGATGGTACCTACAAGACATTTGTAAAGATATTAATTGATAGGCACGAAAATGGCATGTCAGTTGGTGAAGTATACCATGAGGCAAGTGTTGTCTATGTTGAAAAACTTTTTGAGGGTCACCATGATCTTGTTCGTGATTTCGCTCTGTTTTTGCCATCTCATGATGCTTAA 573 0.3717 MSISGFKFLLDLDVLVSLIPVSDERYQTMSRGGKNMILEVVEYLKEVQMRFEDKEKKKFVEFLKIINDYRVRRMTIGSVVEKVKEFLKDHHDLLSGFNNFLPKGYEILLPPKGPVQLEDAIKYVQKVKDRFEDTDGTYKTFVKILIDRHENGMSVGEVYHEASVVYVEKLFEGHHDLVRDFALFLPSHDA* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00821 190 ProSiteProfiles PAH domain profile. 113 188 IPR003822 GO:0006355
Phac3g00821 190 Pfam Paired amphipathic helix repeat 60 101 IPR003822 GO:0006355
Phac3g00821 190 Pfam Paired amphipathic helix repeat 137 185 IPR003822 GO:0006355
Phac3g00821 190 PANTHER SIN3B-RELATED 40 190 IPR039774 GO:0003714
Phac3g00821 190 ProSiteProfiles PAH domain profile. 25 104 IPR003822 GO:0006355
Phac3g00821 190 Gene3D Paired amphipathic helix 40 102 IPR036600 GO:0006355
Phac3g00821 190 Gene3D Paired amphipathic helix 119 186 IPR036600 GO:0006355
Phac3g00821 190 SUPERFAMILY PAH2 domain 110 186 IPR036600 GO:0006355
Phac3g00821 190 SUPERFAMILY PAH2 domain 33 103 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00821 Phac-Chr3 7086199 7101467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00821 113 185 WRKY Transcription Factor Family AT4G12020 35.616 4.11e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac3g00821 PAH 3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00821 K11644 - var:108321439 211.846