Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00820 ATGAAAAGTGGGGGTGAGCAGAGACTAACCGTAAATGATGGTCTGGCATATATCAATTTAGTAAAAGAGGTGTTTCGAGATAAGAAAGAAAAGTATCATGGCTTTCTGAAAGCTATGAAGGACTTGAAGGCTAAAAGGATTGATACAATTGGTGCCATAGCTAAAGTAAAGGAGTTGTTTAAAGGGCACAACGATCTAATTTTGCGATTTAACATTTTCTTGCCAAATGAATATGAAATTAAACTGCCATTGGAGGATGAGCAACCTCCCCTTGAGAAGCCCATTGAATTTGCACAAAAAGAAGTTGAAATGTGTTTGACGAGTGCTGATAACAATCACATGAGGTGTGGTGCAAAAGAAAAGAAGCCTATAGAAGATTCTTCTAGACTAATCATAAATGCGTTGGCATATATCAAGAAAATAAAGGAAGTGTTTTCAGATAAGACAAAAAAGTATTATGACTTTCTGGAAATTATGTGGGATTTCAAGGCTCAAAGAATTGATACAGCAGGTGTTGTAGCAAGAGTGAAGGAATTGTTTAAAGGGCAAAAAGATCTAATTTTGGGATTGAACACTTTCTTGCCAACTGAATATGAAATTACTCTGCCATTGGAGGATGAACTACCTCACAAAAAGAAATCTAGTTGTAGGGTTCAAAATTCTGGTGTCAATCATGATATTGATGAAAATGTTGGCATACACCCTAGTTCATCTGCTGATGAGGATATAAGATCTATGAAAAGTATGTTTAGTGGCGTATTTGGTTACCTTGAAGAAGCAAAGGAGAGATTACGAAATCCAGATGATTTTCAAGAATTTTTGAAATACCTACGTATCTACAACAAGGAACTAATTACCCAAGAAGAATTGAAACTATTGGTATGA 885 0.3548 MKSGGEQRLTVNDGLAYINLVKEVFRDKKEKYHGFLKAMKDLKAKRIDTIGAIAKVKELFKGHNDLILRFNIFLPNEYEIKLPLEDEQPPLEKPIEFAQKEVEMCLTSADNNHMRCGAKEKKPIEDSSRLIINALAYIKKIKEVFSDKTKKYYDFLEIMWDFKAQRIDTAGVVARVKELFKGQKDLILGLNTFLPTEYEITLPLEDELPHKKKSSCRVQNSGVNHDIDENVGIHPSSSADEDIRSMKSMFSGVFGYLEEAKERLRNPDDFQEFLKYLRIYNKELITQEELKLLV* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00820 294 Gene3D Paired amphipathic helix 246 294 IPR036600 GO:0006355
Phac3g00820 294 SUPERFAMILY PAH2 domain 7 76 IPR036600 GO:0006355
Phac3g00820 294 ProSiteProfiles PAH domain profile. 122 197 IPR003822 GO:0006355
Phac3g00820 294 Pfam Paired amphipathic helix repeat 151 194 IPR003822 GO:0006355
Phac3g00820 294 Pfam Paired amphipathic helix repeat 30 74 IPR003822 GO:0006355
Phac3g00820 294 SUPERFAMILY PAH2 domain 133 196 IPR036600 GO:0006355
Phac3g00820 294 ProSiteProfiles PAH domain profile. 7 77 IPR003822 GO:0006355
Phac3g00820 294 Gene3D Paired amphipathic helix 133 195 IPR036600 GO:0006355
Phac3g00820 294 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Phac3g00820 294 FunFam Paired amphipathic helix protein Sin3 13 75 - -
Phac3g00820 294 FunFam Paired amphipathic helix protein Sin3 133 195 - -
Phac3g00820 294 PANTHER SIN3B-RELATED 133 290 IPR039774 GO:0003714
Phac3g00820 294 SUPERFAMILY PAH2 domain 245 291 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00820 Phac-Chr3 7066024 7068334 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00820 133 209 WRKY Transcription Factor Family AT4G12020 51.948 1.78e-18 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac3g00820 PAH 6.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00820 K11644 - gmx:100813398 195.282