Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00819 ATGAAGAGGTCAAGGGATGATGCTTACATGAGCTCACAACACAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACAGATGATGAGTGGTGGTGGTCAGAGACTAACCACAAATGATGCCTTAGCATATCTCAAGGCTGTAAAGGATATGTTTCAAGATAAGAGAGAAAAGTATGATGACTTTTTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACCGGTGTCATAGCAAGAGTGAAGGAGCTGTTTAAAGGTCACAAAGATCTAATTTTGGGATTTAACACCTTCTTGCCGAAGGGATATGAAATTACACTTCCATTGGAGGATGAACAACCACCCCAAAAGAAGCCTGTTGAATTTGCTGAAGCCATAAGTTTTGTGGGCAAGATTAAGACTCGCTTTCAAAGCAATGACAGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGAAAGGAAACTAAGTCCATCACTGAGGTTTATGAGGAGGTTGCTGCACTTTTCCAGGACCATGCAGACCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATACTTCAGGAGCAGCCTCTAATCTCTATGCTTCTACTCGAAATCCTCTGCTTCGTGATAGGAGCTCTGCAATGCCAACAGTGAGGCAAATGCATGTTGAAAAGAGAGAAAGGAACATTGCTTCACAAGGTGATCGTGACTTCAGTGCTGACCATCCTGATCCAGAACTTGACAGATGTTTGGTTAAGGCTGATAAGGATCAGAGGAGGCGTGATGAGAAGGAAAAAGAAAGTAGAGAAGAGAAAGACAGGAGACAACGGGAAAGGGATGATAGAGATTATGATCATGATGCTAGTAGGGAGAATTTATCTCACAAGCGGAAATCTGCTTGTAGGGCTGAAGATTATGGTGCTGAACCGTTGCATGATACTGATGAAAATTTTGGCATGCACCCTGTCTCATATGCTTGTGAGGATAAAAGTTCTTTGAAAAGTTTGTACAGTCCAGTGATTGGTTACCTTGACAAAGTGAAGGAGAAATTACGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCTTAAACATCTACTGCAAGGAAATAATTGCTCGTCATGAATTGCAATCATTGGTGAGCAATTTACTGGGAAAATATGCAGACCTTATGGAGGGATTTGATGAATTTTTGTCTCAATGTGAGAAGAATGAAGGATTCCTTGCTGGTCTTCTGAAAAAAAAATCCTTTTGGCATGAAGGACATGGACCAAAACCAATGAAGGTAGAGGACAAGGATCGTGATAGGGATGATGGGATGAAAGAAAGGGATCGTGAATGCCGAGAAAGGGAGAAATCCAATGCAACTGCTAACAAGGATGTTTCAGCTCCTAAGATGTCTCTATATGCGAGCAAAGATAAGTATGCAGGAAAACCTATAAGTGAGCTGGATCTTTCTAACTGTGAACAATGCACTCCCAGTTATCGTCTTCTTCCCAAAAATTACCTAATACCGCCAGCCAGCCAGAGAACAGAACTTGGTGCAGAGGTGTTGAATGATCACTGGGTTTCTGTTACTTCTGGTAGTGAGGACTATTCCTTTAAACATATGCGCAAAAATCAGTATGAGGAGAGCTTGTTCAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGGCAACTAAGCGTGTTGAAGAGCTCTTAGAAAAGATTAATGCTAATATAATTAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTAACAGCTCTAAATCTTAGGTGCATTGAAAGATTATATGGTGATCATGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCATTTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAACTACCACAAATCACTTGATCATCGTAGTTTTTACTTTAAGCAGCAGGATACAAAGAGCTTGAGTACTAAAGTCTTACTGGTAGAAATCAAAGAAATTAGTGAGAAGAAACGAAAAGAAGATGACGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCAATTATTCCTCACTTGGAATTTGTGTATCCTGATCCAGACATCCATGAAGATCTGTATCAACTCATAAAATATTCTTGTGGAGAAATGTGTACAACTGAACAGTTGGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCTGTGTTTGGAGTTCCTTCTCGATCCCAAGGTCCAGAGGATACAGAAGATGTTGTCAAGGATAGAAATAATTCTACCAAAAGTGGCACTGAAATTGTTGCTGGTGATGGTAGTCCTGTAATGAATCCTAAGAATTTAAACATAAATAGAAATGGGGATGAAAACTTTCCATTTGAACAATCTCATTCCTGCAAACAATGGCAACCAAGTGGACATAATAAGGTTAAAGAGGATAATCATCTTGATTTGGACCGCTTTGCACATAAGACTGAAGCCTTAGGGAGTAATACACAGCAGGGTAAAATGAGTATAAATGCATCTATACCTGATGAAGTATCAAGAGCCAATAAGCAAGATGCCATTGAACGGTTGGTGAATGCAAATGTCTCACTATCCTCGGCTGTGGAGCAAAATAATAGAAGAACAAATGTGGATAACACAACAGGACTTGCTGCCACTCCATTAAGACCTGGTAATATATCTTCTGTGGGAGGAGTTGGTTTACCTTCATTAGAGGGTGCTGATTCAACAAGACCAGTTACATCCACTAATGGGGCCGTCATTGAGGACTCTAAAGTTCACAGATATCGGGAAGAAACAGTGGGACACTTCAGAAGTGAAAGAGAAGAGGGTGAGTTATCACCTAATGGAGACCTTGATGAGGATACCTCTGCAGATTATGGACATTCTGGTTCGGAGGCAGTTCATAGAGGAAAAGATGGCAACATTTACCGACTATACCAAAACAGACATGGAGATGTAGTTCGTGCTGTAGAAGGAGGAGAAAATGAGGCTGATGATGAAGGAGAAGAAAGTCCCCGTAGATCATTGGAGGACAGTGAAAATGCTTCAGAAAATGGTGATGTTTCTGGTACAGAGTCTGGTGAAGGTGAGGAGTGTTCTCGAGAGCATGAGGACGGGGATCGTGATCATGATAACAAGGCAGAGAGTGAAGGTGAGGCAGAAGGAATGGCTGATGCCAACGATGTTGAAGGAGATGGTGCCTCATTGCCATATTCTGAGCGTTTTCTTGTCAATGTAAAGCCTCTGGCTAAATATGTTCCTCCGACATTGCATGAGAAAGAAAGGACTGGTCGAGTCTTTTATGGAAATGACTCCTTTTATTTGCTGTTTAGACTCCATCAGACATTGTATGAGAGGATACGGTCTGCAAAGGTTAACTCATCGTCTGCCGAAAGGAAGTGGAGGGCTTCAAATGATACAGACTCTACTGATCAATATGGCAGGTTTTTAAGTGCCCTTTACAATTTACTGGATGGTTCTTCTGATAGTACAAAATTTGAGGATGATTGTCGAGCTATTATTGGAACTCAATCATATGTCTTATTCACATTAGATAAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGACGAGGTGGATAACAAGCTGCTTCAGCTGTATGCATATGAAAAGTCAAGAAAACCTGGACGATTTGTTGATTTAGTTTGTCATGAAAATGCTCGTGTTCTTCTTCATGATGAAAACATATATCGTATTGAATGTTCAGCTGCACCTACCCAATTGTCTATCCAACTGATGGATTATGGATTTGATAAACCTGAAGTGACTACTGTGTCAATGGACCCTAATTTTTCAGCCTATCTGCACAATGACTTCCTATCTGTTGTCCGTGACAAAAAGGAGAAGTCAGGAGTTTACCTGAAGAGGAATAAGCGCAAGAATGGCAGTAGTGATGAACTTTCAAGCCAGACCATGGATGGACTACAAATTGTCAATGGACTGGAGTGTAAGATAGCTTGCAATTCGTCTAAGGTTTCATACGTTTTAGATACTGAAGACCTTTTATATCAAACAAGAAAAAAAAGGAGGACCTTGCATCAGAGCAATTCATGCCTTGAACAATCAAAGTCCTCAATAATTTCTTCAAGCAGAGAACAACGGGTCTGCAAATTATTTTCAAATTGA 4239 0.4036 MKRSRDDAYMSSQHKRPMVSSRGEPSGQPQMMSGGGQRLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTTGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAISFVGKIKTRFQSNDSVYKSFLDILNMYRKETKSITEVYEEVAALFQDHADLLEEFTHFLPDTSGAASNLYASTRNPLLRDRSSAMPTVRQMHVEKRERNIASQGDRDFSADHPDPELDRCLVKADKDQRRRDEKEKESREEKDRRQRERDDRDYDHDASRENLSHKRKSACRAEDYGAEPLHDTDENFGMHPVSYACEDKSSLKSLYSPVIGYLDKVKEKLRNPEDYQEFLKCLNIYCKEIIARHELQSLVSNLLGKYADLMEGFDEFLSQCEKNEGFLAGLLKKKSFWHEGHGPKPMKVEDKDRDRDDGMKERDRECREREKSNATANKDVSAPKMSLYASKDKYAGKPISELDLSNCEQCTPSYRLLPKNYLIPPASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNAFLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVLLVEIKEISEKKRKEDDVLLAIAAGNRQPIIPHLEFVYPDPDIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPVFGVPSRSQGPEDTEDVVKDRNNSTKSGTEIVAGDGSPVMNPKNLNINRNGDENFPFEQSHSCKQWQPSGHNKVKEDNHLDLDRFAHKTEALGSNTQQGKMSINASIPDEVSRANKQDAIERLVNANVSLSSAVEQNNRRTNVDNTTGLAATPLRPGNISSVGGVGLPSLEGADSTRPVTSTNGAVIEDSKVHRYREETVGHFRSEREEGELSPNGDLDEDTSADYGHSGSEAVHRGKDGNIYRLYQNRHGDVVRAVEGGENEADDEGEESPRRSLEDSENASENGDVSGTESGEGEECSREHEDGDRDHDNKAESEGEAEGMADANDVEGDGASLPYSERFLVNVKPLAKYVPPTLHEKERTGRVFYGNDSFYLLFRLHQTLYERIRSAKVNSSSAERKWRASNDTDSTDQYGRFLSALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVAADEVDNKLLQLYAYEKSRKPGRFVDLVCHENARVLLHDENIYRIECSAAPTQLSIQLMDYGFDKPEVTTVSMDPNFSAYLHNDFLSVVRDKKEKSGVYLKRNKRKNGSSDELSSQTMDGLQIVNGLECKIACNSSKVSYVLDTEDLLYQTRKKRRTLHQSNSCLEQSKSSIISSSREQRVCKLFSN* 1413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00819 1412 MobiDBLite consensus disorder prediction 981 999 - -
Phac3g00819 1412 MobiDBLite consensus disorder prediction 949 972 - -
Phac3g00819 1412 MobiDBLite consensus disorder prediction 14 38 - -
Phac3g00819 1412 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Phac3g00819 1412 MobiDBLite consensus disorder prediction 208 302 - -
Phac3g00819 1412 Pfam C-terminal domain of Sin3a protein 1127 1373 IPR031693 -
Phac3g00819 1412 FunFam Paired amphipathic helix protein SIN3 332 405 - -
Phac3g00819 1412 PANTHER SIN3B-RELATED 38 1271 IPR039774 GO:0003714
Phac3g00819 1412 Coils Coil 255 282 - -
Phac3g00819 1412 Coils Coil 558 578 - -
Phac3g00819 1412 MobiDBLite consensus disorder prediction 1 38 - -
Phac3g00819 1412 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Phac3g00819 1412 MobiDBLite consensus disorder prediction 1018 1041 - -
Phac3g00819 1412 MobiDBLite consensus disorder prediction 1054 1080 - -
Phac3g00819 1412 MobiDBLite consensus disorder prediction 425 458 - -
Phac3g00819 1412 SUPERFAMILY PAH2 domain 341 403 IPR036600 GO:0006355
Phac3g00819 1412 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Phac3g00819 1412 MobiDBLite consensus disorder prediction 765 801 - -
Phac3g00819 1412 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Phac3g00819 1412 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Phac3g00819 1412 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Phac3g00819 1412 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Phac3g00819 1412 Gene3D Paired amphipathic helix 334 405 IPR036600 GO:0006355
Phac3g00819 1412 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Phac3g00819 1412 MobiDBLite consensus disorder prediction 903 999 - -
Phac3g00819 1412 Pfam Sin3 family co-repressor 491 582 IPR013194 -
Phac3g00819 1412 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Phac3g00819 1412 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Phac3g00819 1412 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Phac3g00819 1412 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Phac3g00819 1412 SMART hdac_interact2seq4b 489 589 IPR013194 -
Phac3g00819 1412 MobiDBLite consensus disorder prediction 221 302 - -
Phac3g00819 1412 MobiDBLite consensus disorder prediction 425 465 - -
Phac3g00819 1412 MobiDBLite consensus disorder prediction 1018 1093 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00819 Phac-Chr3 7042274 7053482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00819 28 119 WRKY Transcription Factor Family AT4G12020 60.638 6.39e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac3g00819 Sin3a_C 2.2e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00819 K11644 - gmx:100781798 2298.47