Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00714 ATGGGGGATCGGGGTTCGGGCGCTGCGAAACCGATTTGGATGAAGCAAGCGGAGGAGGCGAAGCTGAAGAGCGAGGCGGAGAAGGCCGCGGCAGCGAAGGCGGCGTTCGAGGCCACGTTCAAGGGTTTGGAGAAGAATCGCGAGAAGGGTGGGGGCGTCGTTCAATCGGACAGCGAGTCGGAGGAGTACGAGGACCTGGCCCATAAGCCCATTGGGCCCGTCGATCCCTCCAAGTGCACTGCCGCGGGTACCGGGATCGCCGGCGGAACGGCGTGTGCTCCGTCATCGTTTGTTGTGGTTGCTAAGGATGCCGATGAGAGGAAGGTTTCCAACGGGGGCGCGCAAATCAAGGTCAGGGTGACGCCCGGGTTGGGTGTTGGAGGGTCTGAGCAAGAAGGGATGGTGAAGGATATGGGTGATGGAACTTATACTGTGACCTATGTGGTGCCCAAGCGAGGAAATTATATGGTCAGTGTTGAGTGTAATGGGAGGCCTATCATGGGGAGTCCCTTTCCTGTGTTTTTCAGTGCAGCAGGTAATGGTAGTGGAGGGCTGCTGGGTTTAGCTCCTGCATCTACATTTCCAAACCTGGTTAATCAAACTATGCCCAACATGCCAAATTACTCTGGGTCAGTTTCAGGGGCATTCCCTGGATTGTTGGGAATGATTCCAGGGGTTGTTGCTGGAGCTTCTGGGGGTGCTATTTTGCCTGGAATTGGGGCCTCACTTGGTGAAGTTTGTCGTGATTACCTTAATGGGCGTTGTGCAAAAGTAGATTGTAAGTTGAATCACCCACCTCATAATTTGCTAATGACTGCCTTAGCTGCGACAACCTCAATGGGAACACTTAGCCAAGCTCCTATGGCACCTTCCGCTGCTGCAATGGCTGCAGCTCAGGCAATAGTTGCTGCCCAAGCCCTTCAAGCGCATGCTGCTCAGGTGCAAGCTCAGTCTGCGAAAGATTCTGCTGGTTCTCCTGAAAAGTCTAGTAAAGACGATGCATTGAAGAAAACCCTTCAAGTTAGCAATCTTAGCCCTCTTCTCACTGTGGAACAGCTAAAGCAACTCTTTGCATTCTGTGGCACTGTTGTTGATTGTACCATCACTGATTCAAAGCATTTTGCTTATATAGAATACTCAAAGCCTGAAGAGGCAACTGCTGCTCTGGCGTTAAACAACATAGATGTTGGGGGGCGCCCTTTGAATGTTGAAATGGCAAAATCACTTCCACAAAAGCCATCTGTGGTGAATTCTTCACTTGCTTCATCATCTCTTCCTCTGATGATGCAGCAAGCTGTTGCAATGCAACAGATGCAATTCCAGCAAGCATTGTTGATGCAACAAACCATGACTGCACAGCAGGCTGCTAATCGAGCTGCAACCATGAAATCTGCCACAGAGCTAGCTGCTGCCCGAGCTGCAGAAATAAGTAAGAAATTGAATCCTGATGGACTTGAAAGTGAAGAGAAAGAGACAAAGCAAAAATCCAGATCACCCTCTCCCCCTCCTGGAAGATCTAGATCGAAGTCAAGATCTCCTATCAATTACCGGAGAAGGAGGAGGTCTCGCTCTTATTCACCTGCTCGTCATTCTAGGGATCATCGGTCACCATTGAGGTTCCATCATTACTCGAGCTATGAAAGGGAAAGGCGCTTTAGAGATAGTAGGGAACATAGTGATAGATACAGAAAACGAGACTTGGATAGATCACTTGATCATCGTTCATCTGTTTCTAGAAGAAACAAAAGTAGGAGTGTTAGTCCTCATACAAGGAAATCATCTGTTTCTCCCAAACGTCATAGAGAAACTTCACCTCATAGAGGAAGGAAACAGTCACGTGCTGATTCAGGCTCTCCAAGTCGTCGCAGAGGTAGGGCTTCTCCAAACACTGATGAAAAAAAATTAAGAAACAGAAGGCACTCAAGGTCAAGATCATCAGATGATAGGCTTCATTCTAGCAAAAATGAGGAAATTTTGCATGGGAAGTCTAAACACAAAGAGAGAAGGCGATCCAGGTCAGTGTCTGTGGATGAAAAGCCTCACAGAAGGAGTCGATCATCCCCAAGAAAAGTGGATGAAAGTAGATCCAGATACAAAAAACGCTCAAGGTCTAAATCTGTGGATGATAAGCATGATTCACCTGAGCGATTGGATCTAAACAGAAATAGAAGAATGAGGCATAGTGATAAAAGACACTCTAGGTCAAGATCTACAGAAAATAGGGATCTATCTGAAGTCAGGGTGGATGAAAGCAAAAATGAGAAGTCAAAACATCGGGATTCTAAAAGGGGCAGGTCAAAATCTGTTGAAGGGAAGCATCGCTCTAAAGATAAATCTGGTGAAAATAGAGATAAGAAATCAAAACATCGGGATAGAAGGCGTTCAAGGTCACCATCATTAGAAGGTGAGCATGACAAAAGAGGCACCTCACCCCATATTAATTTGGATGAGAGAAATTTTGAAGTGAAACAATCCAGGTCAAAGTTCCCTGAAGGCAAGCATCACTTTAGTGATAAATACGGAAATCGAGATGAAAAATCAGAGCATCAAAAGAAAACCCCACCAAAATCAAAATCAGAACAATTTGATGGTAGTGGTTCCTTCCAAGGAAATTTCAAGGATTATGATTCAAAGGGGAAATCACAATCTGATTCTGGATCTGCAGAAATTAAGCATAATTTGAGTGATGGAGAAAATACTACTTGTGATGAAAACTCAAAACTTTCTGGAGATGCCTTGCTGGAACCAATTATCCTGAATGATACTGGGATGCTGACTTCAGTGAATGGTAACTACAAGTTAGATGAGTCAAATGAAGCTGATGATAACCCAGGATGGATATGCGTGGAAGAAGTGGGAAATGTAAAATATTAA 2874 0.4576 MGDRGSGAAKPIWMKQAEEAKLKSEAEKAAAAKAAFEATFKGLEKNREKGGGVVQSDSESEEYEDLAHKPIGPVDPSKCTAAGTGIAGGTACAPSSFVVVAKDADERKVSNGGAQIKVRVTPGLGVGGSEQEGMVKDMGDGTYTVTYVVPKRGNYMVSVECNGRPIMGSPFPVFFSAAGNGSGGLLGLAPASTFPNLVNQTMPNMPNYSGSVSGAFPGLLGMIPGVVAGASGGAILPGIGASLGEVCRDYLNGRCAKVDCKLNHPPHNLLMTALAATTSMGTLSQAPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQSAKDSAGSPEKSSKDDALKKTLQVSNLSPLLTVEQLKQLFAFCGTVVDCTITDSKHFAYIEYSKPEEATAALALNNIDVGGRPLNVEMAKSLPQKPSVVNSSLASSSLPLMMQQAVAMQQMQFQQALLMQQTMTAQQAANRAATMKSATELAAARAAEISKKLNPDGLESEEKETKQKSRSPSPPPGRSRSKSRSPINYRRRRRSRSYSPARHSRDHRSPLRFHHYSSYERERRFRDSREHSDRYRKRDLDRSLDHRSSVSRRNKSRSVSPHTRKSSVSPKRHRETSPHRGRKQSRADSGSPSRRRGRASPNTDEKKLRNRRHSRSRSSDDRLHSSKNEEILHGKSKHKERRRSRSVSVDEKPHRRSRSSPRKVDESRSRYKKRSRSKSVDDKHDSPERLDLNRNRRMRHSDKRHSRSRSTENRDLSEVRVDESKNEKSKHRDSKRGRSKSVEGKHRSKDKSGENRDKKSKHRDRRRSRSPSLEGEHDKRGTSPHINLDERNFEVKQSRSKFPEGKHHFSDKYGNRDEKSEHQKKTPPKSKSEQFDGSGSFQGNFKDYDSKGKSQSDSGSAEIKHNLSDGENTTCDENSKLSGDALLEPIILNDTGMLTSVNGNYKLDESNEADDNPGWICVEEVGNVKY* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00714 957 Gene3D - 297 417 IPR012677 -
Phac3g00714 957 MobiDBLite consensus disorder prediction 670 724 - -
Phac3g00714 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 408 IPR000504 GO:0003723
Phac3g00714 957 SUPERFAMILY E set domains 73 173 IPR014756 -
Phac3g00714 957 Gene3D Immunoglobulins 73 180 IPR013783 -
Phac3g00714 957 Coils Coil 14 35 - -
Phac3g00714 957 SMART rrm1_1 338 404 IPR000504 GO:0003723
Phac3g00714 957 MobiDBLite consensus disorder prediction 732 786 - -
Phac3g00714 957 Pfam Filamin/ABP280 repeat 73 171 IPR017868 -
Phac3g00714 957 CDD RRM_SF 339 404 - -
Phac3g00714 957 MobiDBLite consensus disorder prediction 511 528 - -
Phac3g00714 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 401 IPR000504 GO:0003723
Phac3g00714 957 SMART flmn_3 75 178 IPR001298 GO:0005515
Phac3g00714 957 MobiDBLite consensus disorder prediction 529 579 - -
Phac3g00714 957 MobiDBLite consensus disorder prediction 608 663 - -
Phac3g00714 957 MobiDBLite consensus disorder prediction 477 907 - -
Phac3g00714 957 SUPERFAMILY RNA-binding domain, RBD 325 414 IPR035979 GO:0003676
Phac3g00714 957 MobiDBLite consensus disorder prediction 794 858 - -
Phac3g00714 957 ProSiteProfiles Zinc finger C3H1-type profile. 246 267 IPR000571 GO:0046872
Phac3g00714 957 MobiDBLite consensus disorder prediction 479 496 - -
Phac3g00714 957 ProSiteProfiles Filamin/ABP280 repeat profile. 71 175 IPR017868 -
Phac3g00714 957 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 280 668 - -
Phac3g00714 957 MobiDBLite consensus disorder prediction 859 907 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00714 Phac-Chr3 5962470 5970100 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00714 324 407 Eukaryotic Initiation Factors Gene Family AT2G23350 35.556 9.18e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00714 - - gmx:100790138 1356.66