Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00680 ATGGCTACCCCTAGTAAATCAACACCAATAACATCTTCTGACACTTTTGAACAGAAGGGGAAGACTATTACTGAGTCAAATGCAACCATTCTTCAATGTCCTTTAAACCAACAACTCCATAGCTCCTTAGATGGCCCAGTAGCAATCCTTTGGGATATTGAGAATTGTCCTGTTCCAACTGATGTACGGCCTGAAGATGTAGCAGGTAATATAAGAATGGCTTTACGGGTGCACCCAGTAATTAAAGGAGCTGTTATGCTGTTTTCTGCGTATGGGGATTTCAACTCTTTCCCTCGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTATTGATGTTCCAAATGGGAGAAAAGATGCTGCTGATAAAGCTATCTTGGTCGACATGTTCTTATTTGCTCTCGACAACCCTCCACCATCCTATATTATGCTTATATCTGGAGATGTTGATTTTGCACCAGCACTCCACATCCTTGGTCAGCGAGGATATACTGTTATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCGTCTGCCCTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCTAGTGTGGCACGCGGGGAAGGCTTTGTGCCTCCCTCAAAGGCTTTAATGCCACCCCGGGGAGGTCCAATTGAGCTTGCTGGATATTTGATGGGGTGCCATATCAATGACCATTCTGAAGGATTAAATGAAGAAGAAGCAATAGTTTATAGAGGTATGTCACAGAGCTATTACAACTCAAGGGAATTTTCATTGGTGTCACAATCACTGTCTGAATACAACTGTGGCACATTGAACGGGGCTTGCTTGCCAACAACTATGAGATCACACAGCCTTCCATCTGTATTCAATGATGTTCAAGGAGGGTCGATGATGCCTTCTGGTGATCCTAATGAATGCCAGTTATGGGTACAACCTGGGGATTTAAATGGTCTCAAGGGGCAGCTGGTAAGGTTGCTTGAACTTTTTGGGGGAAGCCTGCCTCTGGCCCGAGTTCCGGCAGAGTACCAGAAAATTTATGGGAGACCTCTTTATGTAGCTGAATATGGGGCAATAAAGTTGGTCAATCTTTTCAAGAAGATGGGCAATGCCATGACTGTGGAAGGGAAAGGGAATCGTAAATTTGTGTATCTCAGAAACTGGAAGGCAGGCCCAAGCGCTCCTCCTCTCTCTCTGGCAAAGAAAGATAAGAAGGGAAAGGGAACCCAGGAAGAGAATGTGAATGTTGTCACCGGAGGATGGTCTTCAGATGAGTTCTCAGATGAAGAAAGAGTAGTCATAGAAGAAGATGATGAAAGAAATTTCACAGGCAAGGGCAATCAGGAGACTGCAGCCAAATGTGAAGTTGATGACTGTGTTATTGAGAAATTCAAGTATGAGCTGCAAGAGATTCTAGTAAGCTATTCTTGTCGGATATCCCTTGGTTGTTTTGAGGATATATACCAGCAGCGATACAAAAAACAACTAGAATATCAGAGATTTGGTGTGGACAAGTTGGAAGATTTGATTGAGAAAGTGAGTGATGTGGTGGTATTGCATGAGGAACCAGTAAGCAGGAGCAAGTTTCTGGCTGCTGTGGGTGGTTAG 1599 0.4434 MATPSKSTPITSSDTFEQKGKTITESNATILQCPLNQQLHSSLDGPVAILWDIENCPVPTDVRPEDVAGNIRMALRVHPVIKGAVMLFSAYGDFNSFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSYIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWPSVARGEGFVPPSKALMPPRGGPIELAGYLMGCHINDHSEGLNEEEAIVYRGMSQSYYNSREFSLVSQSLSEYNCGTLNGACLPTTMRSHSLPSVFNDVQGGSMMPSGDPNECQLWVQPGDLNGLKGQLVRLLELFGGSLPLARVPAEYQKIYGRPLYVAEYGAIKLVNLFKKMGNAMTVEGKGNRKFVYLRNWKAGPSAPPLSLAKKDKKGKGTQEENVNVVTGGWSSDEFSDEERVVIEEDDERNFTGKGNQETAAKCEVDDCVIEKFKYELQEILVSYSCRISLGCFEDIYQQRYKKQLEYQRFGVDKLEDLIEKVSDVVVLHEEPVSRSKFLAAVGG* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00680 532 CDD PIN_limkain_b1_N_like 46 172 - -
Phac3g00680 532 CDD LOTUS 313 382 - -
Phac3g00680 532 CDD LOTUS 458 520 - -
Phac3g00680 532 Pfam NYN domain 46 186 IPR021139 GO:0004540
Phac3g00680 532 Pfam OST-HTH/LOTUS domain 315 380 IPR025605 -
Phac3g00680 532 Pfam OST-HTH/LOTUS domain 458 520 IPR025605 -
Phac3g00680 532 Gene3D - 43 192 - -
Phac3g00680 532 PANTHER LIMKAIN B LKAP 21 495 IPR024768 GO:0005777|GO:0010468
Phac3g00680 532 Gene3D - 454 524 IPR041966 -
Phac3g00680 532 Gene3D - 312 381 IPR041966 -
Phac3g00680 532 ProSiteProfiles OST-type HTH domain profile. 312 384 IPR025605 -
Phac3g00680 532 ProSiteProfiles OST-type HTH domain profile. 457 531 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00680 Phac-Chr3 5572082 5575913 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00680 43 197 C2H2 Transcription Factor Family AT5G61190 41.935 7.43e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00680 - - gmx:100818186 968.763