Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00674 ATGCCTGGAAGTTTAGAACCCTTGGATTTGGGGGTTCACATACCCTACCACTTCAGATGCCCCATCTCGCTTGAACTCATGAGAGACCCAGTCACCGTCTGCACCGGTCAAACCTACGACCGACCCAGCATCGACTCCTGGGTTAGCGCCGGTAACACTACCTGCCCCGTCACACGTGCCACTCTCACCGACTTCACCCTAATCCCCAACCACACCCTCCGACGCCTTATCCAAGAGTGGTGCGTGGCAAACCGCGCTTTCGGTGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCGGCCTTGGTTCGCTCCCTTCTCAACCAAACATCCTCCGATTCCGCTCCAACTCACCTTCGCCTCTCCTCTCTCCGACGACTCAGACAACTGGCTCGCGACTCCGACAAGAATCGCTCCCTCATTTCCTCTCACAACGTCCGCCAGATCCTTCTCCCTATCGTTTTCAACGGTGCCAACGAGTTGAACCACGAGTCGCTCGCGCTACTCGTTTTGTTCCCGCTCGGCGAGTCCGAATGCGCCGCGCTCGCTTCCGACTCCGAGAAGGTTAATTATCTCTCGCGGTTGCTCTCGCACAACTCGCTTGACGTCCGAGTCAACTCGGCCGCGCTGATTGAGATCGTCGTCGCCGGCACGCACTCGCCGGAGCTCCGCGCGCGGGTGAGCGAGGTTGATGAAATCTACGATGGTGTCGTGGACCTGCTCCGTAGCCCGATCTCGTACCCGCGCGCGCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTGTGCTTGGTGAAGCAGACGCGGCACAAGGCGGTGGCCGCTGGCGCGCCGGCGGTACTCGTCGACAGGCTTGCGGACTTCGAGAAATGCGACGCGGAGAGGGCGCTTGCCACGGTGGAGCTCCTTTGCAGGATTCCCGCGGGATGCGAGGCGTTCGCCGGCCACGCACTGACGGTGCCGATGCTGGTGAAGATAATCCTGAAGATATCACATCGCGCGACGGAGTACGCGGCCGGAGCCTTGCTGTCCCTGTGCTCCGAATCGGAGCGGTGCCAGCGAGAGGCGGTGACGGCGGGGGTGTTGACTCAGCTTCTGCTTCTGGTGCAGAGCGATTGCACGGAGAGAGCCAAGAGGAAGGCCCAGATGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTGCATCGGAAATTCTGACGATTTTGCATGCAGCCAGGTTGTTGTGGTTCCCTTTTGA 1242 0.6014 MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRPSIDSWVSAGNTTCPVTRATLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQTSSDSAPTHLRLSSLRRLRQLARDSDKNRSLISSHNVRQILLPIVFNGANELNHESLALLVLFPLGESECAALASDSEKVNYLSRLLSHNSLDVRVNSAALIEIVVAGTHSPELRARVSEVDEIYDGVVDLLRSPISYPRALKIGIKALFALCLVKQTRHKAVAAGAPAVLVDRLADFEKCDAERALATVELLCRIPAGCEAFAGHALTVPMLVKIILKISHRATEYAAGALLSLCSESERCQREAVTAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDCIGNSDDFACSQVVVVPF* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00674 413 Gene3D - 90 261 IPR011989 -
Phac3g00674 413 PANTHER WDSAM1 PROTEIN 13 397 IPR045185 GO:0061630
Phac3g00674 413 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Phac3g00674 413 Gene3D - 262 389 IPR011989 -
Phac3g00674 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Phac3g00674 413 CDD RING-Ubox_PUB 15 67 IPR045210 -
Phac3g00674 413 SUPERFAMILY ARM repeat 103 389 IPR016024 -
Phac3g00674 413 SUPERFAMILY RING/U-box 12 90 - -
Phac3g00674 413 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Phac3g00674 413 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Phac3g00674 413 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00674 Phac-Chr3 5518457 5521736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00674 1 413 U-box Gene Family AT1G49780 66.509 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00674 - - var:108341190 759.985