Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00673 ATGGATTTCTTATTGGAAAATCATATAGGGAGTTCTTCTAGTTCTAATCGTTCGAGTGAAATTATGAAAAACGAAACGTTATCGAATCAACAACAAGGTGAAATTCTTATGAATAAGACGTCGAATCAACAACAAGGTGAAATTTTTATGAATAAGACGCCGGATCAAGATATTTTTGAGAAAAATGAGAAGAAAATTGTTATTAGTGGCGAAGGGTCATACGATCTAGAAATTAATGATGAAATGCATCCATCGATCAAAAGAGGTCGACGAAAGAAAATGAAAGAAATGTTTGACGATCTTAGTGGTTTACTCCCACAACTTCCTTCAAAGGTGGATAAAGCAAGCATAGTGAATGAAGCAGTGAACTACATAAAAGTTCTGGAGGAAACCCTGGAAAAGCTAGAGAGAAAGAAACAAGAAAGGGCAGAAGGTGGTCTGAAACAAATTATGGGAACAACTTCTGGTGCAGTTTCTGTCTCTGGGAAGCAGAAAGTAGCTTTTGATAAAACTTGGGCTGCTTCAAACATGGTGCTCAACATTCAAGGAAATGAAGCTCAATTCTCCATTTGCTCAGTCCATAAGCCAGGACTCATGACCAGCATTGCTTCTGTGCTGGAGAAGCACAACATAGAACTCATTTCTGCCACCATTTCAGCCAATGGAAATGGAAGTACATGCATGATTCAAGTCCATGGAAAACAAGGTTGGGATGAAAATTCAGCAGAGGAAACTTACAGGAAAGCTGCTGAAGAGATTATGCCATTGATCGCTTAA 777 0.3848 MDFLLENHIGSSSSSNRSSEIMKNETLSNQQQGEILMNKTSNQQQGEIFMNKTPDQDIFEKNEKKIVISGEGSYDLEINDEMHPSIKRGRRKKMKEMFDDLSGLLPQLPSKVDKASIVNEAVNYIKVLEETLEKLERKKQERAEGGLKQIMGTTSGAVSVSGKQKVAFDKTWAASNMVLNIQGNEAQFSICSVHKPGLMTSIASVLEKHNIELISATISANGNGSTCMIQVHGKQGWDENSAEETYRKAAEEIMPLIA* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00673 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 128 IPR011598 GO:0046983
Phac3g00673 258 Pfam Helix-loop-helix DNA-binding domain 82 128 IPR011598 GO:0046983
Phac3g00673 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 141 IPR036638 GO:0046983
Phac3g00673 258 MobiDBLite consensus disorder prediction 1 22 - -
Phac3g00673 258 Coils Coil 118 145 - -
Phac3g00673 258 MobiDBLite consensus disorder prediction 7 22 - -
Phac3g00673 258 CDD bHLH_AtbHLH_like 83 136 IPR045239 -
Phac3g00673 258 SUPERFAMILY ACT-like 185 244 IPR045865 -
Phac3g00673 258 SMART finulus 84 134 IPR011598 GO:0046983
Phac3g00673 258 Gene3D - 77 144 IPR036638 GO:0046983
Phac3g00673 258 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 14 256 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00673 Phac-Chr3 5506695 5511427 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00673 79 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.975 1.25e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac3g00673 HLH 2.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00673 - - pvu:PHAVU_003G048100g 461.455