Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00672 ATGGTCTTGATCTCAGAAGATGAAGGTTTGCTTGATATGAACTTCCTGTGGGAAAACCATTGGTGGAATCCCTCCGACTCCGATAACTCGCGTGAAACTAAAGGAAACACGAAGTCAGAAAAGCAGAAGAATGAAAGGGATGAAGGTGCGAAGAAGAAGAAGAAGAAGCGAAATCATGGAGAGCTGAAGAAGATTACGAGTGCAGAAGGAAAAGGTGAAAAGAGTTCTGATCATGAAATGCATATATGGACTGAGAGAGAAAGGAGAAAAAAAATGAAAAACATGTTCACTGCTCTTCATGCTTTGCTTCCCCATCTTCCTTCTAAGGCGGATAAATCAACGGTTGTGGATGAAGCAGTGAGCTACATAAAAAACCTTGAGAGAACCCTGGAAAAGCTAGAGAAACAGAAAGAAGAAAGACTCCAATGTGGCTCCACGTTCATGACTGCTCAGGAACTTTCTTCTAATTACAACTTTTCAAACGCGATTATGGGAACTTCTTCAAACGCGCTTTTGTTCCCTGCGCAGCGGCCAGTGGCTTTTCATAAAACGTGGGCCTCTTCAAACATAGTCTTGAATGTTTGTGGAGACGAGGCCCAATTCTGCATTTGCGCGGCCCATAAGCCAGGCCTCATGTCCAGCGTAGCTTTTGTGCTGGATAAATACAACATTGAGCTTCTATCTGCCCACGTTTCCTGCATTGGGAATGGAAATGCAATCATGATTCAAGCTCACGGGAAACGAGCTTCACATCAGATGCTGGATGCAAATTCAGTCGAAGAAATTTATAGGCAGGCTGCGGGAGAGATTCTGCTATGGATCGCTTAA 828 0.4396 MVLISEDEGLLDMNFLWENHWWNPSDSDNSRETKGNTKSEKQKNERDEGAKKKKKKRNHGELKKITSAEGKGEKSSDHEMHIWTERERRKKMKNMFTALHALLPHLPSKADKSTVVDEAVSYIKNLERTLEKLEKQKEERLQCGSTFMTAQELSSNYNFSNAIMGTSSNALLFPAQRPVAFHKTWASSNIVLNVCGDEAQFCICAAHKPGLMSSVAFVLDKYNIELLSAHVSCIGNGNAIMIQAHGKRASHQMLDANSVEEIYRQAAGEILLWIA* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00672 275 Gene3D - 69 142 IPR036638 GO:0046983
Phac3g00672 275 MobiDBLite consensus disorder prediction 25 51 - -
Phac3g00672 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 139 IPR036638 GO:0046983
Phac3g00672 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 126 IPR011598 GO:0046983
Phac3g00672 275 SMART finulus 84 132 IPR011598 GO:0046983
Phac3g00672 275 Coils Coil 116 143 - -
Phac3g00672 275 MobiDBLite consensus disorder prediction 62 79 - -
Phac3g00672 275 CDD bHLH_AtbHLH_like 81 134 IPR045239 -
Phac3g00672 275 Pfam Helix-loop-helix DNA-binding domain 81 127 IPR011598 GO:0046983
Phac3g00672 275 MobiDBLite consensus disorder prediction 22 79 - -
Phac3g00672 275 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 30 274 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00672 Phac-Chr3 5500742 5503324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00672 52 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 40.076 2.46e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac3g00672 HLH 4.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00672 - - pvu:PHAVU_003G048000g 501.13