Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00664 ATGGAGATCGCTCACGAGCCACCTCCTTCCCTCGACGGAGGTCCCATCCCCGTCGAGACACTCGCCAATTCTCCGTCGTCGTCTTCCCCTTCCTCCTCCTCTTCTTCCTCCTCCGCTTCGTCGCCGCGCGGTTCCAAGGGAAAGGAGGTCGAGTCGACCGCTTCGGCGACGGGGACGGCAGCTGCGCCAGCCAAGTACGATGACGAGGAGGAGGAGGAAGAGGACGTGTGCCGGATTTGCCGGAACCCTGGTGACGCCGAGAATCCACTCCGGTATCCGTGCGCGTGCAGCGGGAGCATCAAGTTTGTGCATCAGGATTGTCTCCTTCAATGGCTTAATCACAGCAACGCGCGCCAATGCGAGGTCTGCAAACATGCATTTTCATTCTCTCCTGTTTATGCTGATAATGCCCCGGCTAGGTTACCTTTTCAAGAGTTTGTGGTTGGAATGGCAATGAAAGCCTGCCATGTTCTTCAATTCTTTTTGCGCCTGAGTTTTGTGCTATCTGTGTGGCTCTTAATTATACCTTTCATAACATTCTGGATATGGCGATTAGCTTTTGTGAGGAGTTTAGGTGAAGCCCAGAGGTTATTCTTAAGCCATTTATCAACAGCAGTTATCCTGACCGATTGCCTCCATGGTTTTCTACTTTCTGCAAGCATTGTCTTCATTTTTCTTGGGGCCACTTCTTTGAGAGATTACTTTAGGCATTTGCGAGAAATTGGAGGACAGGATGCTGATAGAGAAGATGAAGTGGACAGAAATGGTGCTCGAATGGCTAGAAGACCTCCTGTACAAGCTAATCGTAATGCCAATGCTGACGGGAATGGTGAAGATGCTGGTGGAGCGCAAGGAATTGCAGGTGCAGGTCAAGTAATTAGGAGAAATGCTGAAAACGTTGCTGCACGGTGGGAGATGCAAGCAGCACGACTTGAGGCACATGTTGAACAGATGTTTGATGGTCTGGATGATGCTGATGGAGCAGAAGATGTTCCCTTTGATGAGCTTGTTGGCATGCAGGGTCCAGTTTTTCATTTGGTTGAAAATGCATTTACTGTGCTGGCGAGCAATATGATTTTCCTTGGTGTTGTAATCTTTGTGCCATTCTCATTGGGTCGTATCATACTCCATTACCTATCCTGGTTCTTCTCAACTGCTAGTGGTCCTGTGTTGTCAGCTGTGGCCCCCCTTGCAGACACATCTCTTTCTCTGGCAAATATTACTTTAAAGAATGCATTAACAGCTGTTAAAAATTTGTCATCTGAAACTCAAGAAAGTGGACCAATTGGTCAGGTTGCAGAAATGATGAAAGCCAATTCTAGTGAATTGAGTGAAATGTCAAACAACATAACATCTGCCTCAGCTGTTATCTTGAAAGGAGGGTCAATTGGAACTTCAAGGCTTTCTGATGTTACCACTCTAGCTATTGGATATGTTTTTATTCTTACTCTAATTTTCTGCTACTTCGGGATTGTTGCTGTAATTCGTTACACAAAGGGTGAGCCTTTGACCATGGGAAGGTTTTATGGCATTGCTTCTATAGCAGAGACAATTCCATCTCTCTTCAGGCAGTTTTTGGCAGCAATGAAGCATTTGATGACCATGGTTAAGGTTGCTTTCCTCTTAATCATTGAACTCGGGGTATTTCCTTTGATGTGTGGATGGTGGCTTGATGTTTGTACCATTCAGATGTTTGGGAAGACAATGGTTCACAGAGTTCAGTTCTTCTCTGCATCCCCTTTAGCAAGCTCATTGGTTCATTGGGTTGTTGGGATTGTGTACATGCTACAAATTAGCATATTTGTCAGCCTTCTTAGAGGGGTTTTACGTAATGGAGTTTTGTACTTCCTCCGGGACCCTGCAGATCCAAATTATAATCCATTTCGTGATCTTATAGATGATCCCGTGCACAAACATGCTCGCAGGGTTCTATTATCTGTCGCAGTTTATGGGAGTCTGATTGTGATGCTGGTATTCTTGCCTGTCAAACTTGCCATGCGGATGGCACCTTCCATTTTCCCACTTGACATATCGGTATCTGATCCATTCACTGAAATTCCAGCTGACATGCTTCTCTTTCAGATTTGTATCCCATTTGCTATTGAGCATTTTAAATTGAGGACAACTATAAAATCCCTACTGCGCTATTGGTTTACTGCTGTTGGTTGGGCTCTTGGTTTAACTGATTTCTTACTGCCTAGACCTGATGACAGTGTAAATCAAGATAATGGAAATGGGGAGCCAGGTAGGCAAGAAAGGCTACAAGTAGTACAAGCTGGAGTGCATGATCTGGGTTTGGTGCCATTTGCAGGTGATAATTTGAACAGGGCTGTTAGTACAGTGGGAGAACTGAATGCTGGAGAGGATTATGATAATGATGAGCAATCCGACTCTGACAGTTATGCCTTTGTGCTTCGCATTGTTCTCTTACTGGTGATTGCTTGGATGACTCTCCTTGTCTTCAACTCTGCTCTGATAGTTGTACCAATTTCACTTGGACGGGCACTTTTCAATTTTATTCCTCGCCTTCCCATAACTCATGGCATTAAATGCAATGATCTGTATGCATTTATCATTGGAAGCTATGTAATCTGGACTGCCGTTGCTGGAGTTAGATACTCAATTGAACAGGTAAGAAGAAGGAGAGCTTCTGTTTTGTTTGGCCAAGTATGGAAATGGTGCGGCATTCTTGTGAAGAGTTCTGCACTTCTGTCTATATGGATATTTGTTATCCCAGTGCTAATTGGTCTTCTCTTTGAGCTTTTGGTCATTGTGCCAATGAGAGTTCCGGTGGATGAAAGTCCAGTATTCCTTCTTTATCAAGACTGGGCATTAGGCCTTATATTTCTGAAGATATGGACTAGATTGGTTATGTTGGACCACATGATGCCTCTGGTGGATGAAAGTTGGCGAGTCAAATTTGAGAGGGTGAGAGAAGATGGGTTCTCCAGGTTGCAAGGTCTATGGGTCCTTCGGGAGATTGTACTTCCGATCATAATGAAGTTGTTGACAGCATTATGTGTACCTTATGTTTTGGCCAAAGGTGTATTTCCAGTTCTTGGGTATCCGTTGGTGATCAATTCTGCTGTTTATCGGTTTGCATGGTTGGGATGCCTATGTTTCAGTTTCTTGTGCTTCTGTGCCAAGAGATTCCATGTCTGGTTCACAAATCTCCATAACTCCATACGCGATGACCGGTATCTCATTGGCCGAAGGTTGCATAACTATGGAGAACATGTTGAGAAAGCAAATGAAGCAGGAACTTCTACAGAGTTGCAGGACACTATCTTACTTGGTACGGGCTTAAATCAACAAGATCATGATGCAGATGTTGGACTACGGTTGAGGCGTGTAAATCATCAACAGGTAGGCTGA 3375 0.4468 MEIAHEPPPSLDGGPIPVETLANSPSSSSPSSSSSSSSASSPRGSKGKEVESTASATGTAAAPAKYDDEEEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYADNAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSLGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADREDEVDRNGARMARRPPVQANRNANADGNGEDAGGAQGIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILHYLSWFFSTASGPVLSAVAPLADTSLSLANITLKNALTAVKNLSSETQESGPIGQVAEMMKANSSELSEMSNNITSASAVILKGGSIGTSRLSDVTTLAIGYVFILTLIFCYFGIVAVIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMKHLMTMVKVAFLLIIELGVFPLMCGWWLDVCTIQMFGKTMVHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPDDSVNQDNGNGEPGRQERLQVVQAGVHDLGLVPFAGDNLNRAVSTVGELNAGEDYDNDEQSDSDSYAFVLRIVLLLVIAWMTLLVFNSALIVVPISLGRALFNFIPRLPITHGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQVRRRRASVLFGQVWKWCGILVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLAKGVFPVLGYPLVINSAVYRFAWLGCLCFSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNYGEHVEKANEAGTSTELQDTILLGTGLNQQDHDADVGLRLRRVNHQQVG* 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00664 1124 CDD RING_CH-C4HC3_MARCH6 76 125 - -
Phac3g00664 1124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 135 IPR013083 -
Phac3g00664 1124 SUPERFAMILY RING/U-box 71 127 - -
Phac3g00664 1124 Coils Coil 294 314 - -
Phac3g00664 1124 PANTHER SSM4 PROTEIN 60 1079 - -
Phac3g00664 1124 ProSiteProfiles Zinc finger RING-CH-type profile. 69 130 IPR011016 GO:0008270
Phac3g00664 1124 FunFam Probable E3 ubiquitin ligase SUD1 62 135 - -
Phac3g00664 1124 Pfam RING-variant domain 77 123 IPR011016 GO:0008270
Phac3g00664 1124 SMART ringv_2 76 124 IPR011016 GO:0008270
Phac3g00664 1124 MobiDBLite consensus disorder prediction 246 283 - -
Phac3g00664 1124 MobiDBLite consensus disorder prediction 1 70 - -
Phac3g00664 1124 ProSiteProfiles Zinc finger RING-type profile. 77 124 IPR001841 -
Phac3g00664 1124 MobiDBLite consensus disorder prediction 20 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00664 Phac-Chr3 5449320 5456791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00664 31 144 C3H Transcription Factor Family AT1G50440 30.081 5.26e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00664 K10661 - gmx:100813205 2018.43