Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00663 ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATGCCCGGTCCCAACGGTGCTGCTGCTGCTGGTGCTGGTGCTGGGGGAAACCAGTTTGTGACGACGTCGCTTTACGTCGGAGATCTCGACCCGAACGTCACGGACTCACAGCTGTATGATCTGTTCAATCAATTGGGCCAAGTCGTGTCTGTTAGGGTTTGCAGGGACTTGACCAGCAGAAGATCGCTCGGTTACGGTTACGTCAACTATAGCAACCCGCAAGATGCTGCCAGAGCATTAGATGTTCTGAATTTCACTCCTCTCAATAACAAGCCCATCCGGATTATGTATTCACATCGTGATCCTAGTATCCGGAAAAGTGGGGCAGGAAATATTTTTATCAAGAATTTGGATAGGGCAATTGACCACAAGGCATTACATGATACCTTCTCTACATTTGGAAATATCCTTTCATGCAAGGTAGCTACAGATTCATCTGGCCAATCAAAAGGATATGGCTTTGTTCAATTTGATAATGAGGAATCTGCCCAAAAAGCCATAGAGAAGCTGAATGGTATGTTGTTGAATGATAAGCAAGTGTATGTGGGACCCTTTCTTCGCAAGCAAGAGAGAGAAGGTGCTATTGACAAAGCAAAATTCAATAATGTTTTTGTCAAGAATCTAGCAGAATCAACTACTGATGATGAATTGAAGGTGATTTTTGGTGAATTTGGAACTATTACTAGTGCTGTAGTGATGAGGGATGGAGATGGGAAATCAAAGTGCTTTGGGTTTGTGAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCTCTCAATGGCAAAAAACTTGATGATAAGGAATGGTATGTTGGAAAAGCTCAGAAGAAATCTGAAAGGGAGAACGAATTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTAGATGATAGCATTGGTGATGATAAACTTAAGGAGCTGTTCTCCCCTTTTGGTACCATTACCTCTTGCAAGGTTATGAGGGACCCGAATGGCGTAAGTCGAGGATCAGGATTTGTTGCATTCTCAACTCCTGAGGAGGCATCTAGAGCACTTTCTGAGATGAATGGCAAAATGGTGGTAAGTAAACCTCTGTATGTGACTCTAGCTCAAAGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAGTTTGCTCAAATGCGGCCTGTTGGAATGCCACCATCTGTTGGTCCTCGTGTTCCAATGTATCCTCCAGGTGGTCCAGGTATTGGTCAACAAATATTTTATCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGTTATCAACAACAACTTGTGCCTGGTATGAGGCCAGGTGCAGCTCCTGTGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGACAACAGGGTCAGCGCCCTGGTGGAAGGCGTGCAGTCCAGCAGTCCCAGCAGCCAGTTCCAATGATGCCACAGCAGATGCTTCCTAGGGGACGTGTCTATCGTTATCCTCCCGGCAGGGGTATTCCTGATGTTCCTATGCCTGGGGTTGCTGGAGGTATGTTTTCTGTTCCATATGATGTGGGTGGGATGCCGCTGCGTGATGCATCACTCTCCCAGCAAATTCCTATTGGGGCTTTGGCATCGGCTCTGGCTAATGCTTCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCACTTGTGGAACAGTTAGAGCCTGATAATGCTGCAAAAGTCACAGGCATGCTTCTTGAGATGGACCAGACTGAAGTTCTGCATTTGCTCGAGTCACCAGAAGCGCTGAAAGCGAAGGTGGCTGAGGCGATGGATGTCCTAAGGAATGTTGCTCAGCAGCAGCAGGCTGGTGGTGCTGCTGATCAGCTGGCTTCTTTATCACTTAATGACAACCCATGA 1950 0.4656 MAQVQVQPQNAMPGPNGAAAAGAGAGGNQFVTTSLYVGDLDPNVTDSQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQEREGAIDKAKFNNVFVKNLAESTTDDELKVIFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKLDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDDKLKELFSPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFYQGPPAIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQRPGGRRAVQQSQQPVPMMPQQMLPRGRVYRYPPGRGIPDVPMPGVAGGMFSVPYDVGGMPLRDASLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGGAADQLASLSLNDNP* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00663 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 385 IPR000504 GO:0003723
Phac3g00663 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 105 IPR000504 GO:0003723
Phac3g00663 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 282 IPR000504 GO:0003723
Phac3g00663 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Phac3g00663 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723
Phac3g00663 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Phac3g00663 649 PANTHER RNA BINDING PROTEIN 32 95 - -
Phac3g00663 649 Gene3D - 27 121 IPR012677 -
Phac3g00663 649 CDD RRM1_I_PABPs 34 113 IPR034364 -
Phac3g00663 649 Gene3D - 197 296 IPR012677 -
Phac3g00663 649 CDD RRM3_I_PABPs 211 290 - -
Phac3g00663 649 SUPERFAMILY RNA-binding domain, RBD 212 396 IPR035979 GO:0003676
Phac3g00663 649 Gene3D - 297 400 IPR012677 -
Phac3g00663 649 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Phac3g00663 649 CDD RRM4_I_PABPs 314 392 - -
Phac3g00663 649 Gene3D - 122 194 IPR012677 -
Phac3g00663 649 MobiDBLite consensus disorder prediction 1 23 - -
Phac3g00663 649 CDD RRM2_I_PABPs 119 195 IPR045305 -
Phac3g00663 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 193 IPR000504 GO:0003723
Phac3g00663 649 SMART rrm2_1 34 107 IPR003954 GO:0003676
Phac3g00663 649 SMART rrm2_1 122 194 IPR003954 GO:0003676
Phac3g00663 649 SMART rrm2_1 316 388 IPR003954 GO:0003676
Phac3g00663 649 SMART rrm2_1 213 285 IPR003954 GO:0003676
Phac3g00663 649 FunFam Polyadenylate-binding protein 122 195 - -
Phac3g00663 649 SUPERFAMILY PABC (PABP) domain 493 645 IPR036053 GO:0003723
Phac3g00663 649 SUPERFAMILY RNA-binding domain, RBD 33 202 IPR035979 GO:0003676
Phac3g00663 649 SMART rrm1_1 34 107 IPR000504 GO:0003723
Phac3g00663 649 SMART rrm1_1 213 285 IPR000504 GO:0003723
Phac3g00663 649 SMART rrm1_1 316 388 IPR000504 GO:0003723
Phac3g00663 649 SMART rrm1_1 122 194 IPR000504 GO:0003723
Phac3g00663 649 FunFam Polyadenylate-binding protein 298 403 - -
Phac3g00663 649 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 34 625 IPR006515 GO:0003723
Phac3g00663 649 FunFam Polyadenylate-binding protein 548 630 - -
Phac3g00663 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723
Phac3g00663 649 SMART poly_2 564 627 IPR002004 GO:0003723
Phac3g00663 649 FunFam Polyadenylate-binding protein 19 121 - -
Phac3g00663 649 Gene3D - 548 631 - -
Phac3g00663 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Phac3g00663 649 MobiDBLite consensus disorder prediction 476 496 - -
Phac3g00663 649 Coils Coil 287 311 - -
Phac3g00663 649 FunFam Polyadenylate-binding protein 203 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00663 Phac-Chr3 5438160 5444411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00663 1 646 Eukaryotic Initiation Factors Gene Family AT4G34110 72.146 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00663 K13126 - gmx:100813735 1146.72