Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00569 ATGGAAAGCTGTACCAGCAACAGAAGTGACAACAACAATCACTGGAGAGCCGAGGAAGCCATTGGTGGCAACACTGAAGCTCTTCAGGCCCTTAGAGAACTCATCATATTCCCTCTGCACTTCTCTCAAGAGGCACAGAAGCTTGGCCTTAAGTGGTCCAGAGGATTGCTGCTGTACGGTCCACCAGGCACTGGAAAGACAAGTTTGGTACGAGCAGTTGTTCGAGAGTGTGGGGCACATTTGACAATTATCAGTCCACACTCTGTTCGTAGAGCACATGCTGGTGAAAGTGAGAGAATTCTCCGTGATGCTTTTTCAGAGGCATCATCTCATGTAGCCTTGGGCAAGCCATCGGTTATCTTTATAGATGAAATCGATGCACTGTGTGCTCGCCGAGATTCCAAAAGGGAGCAAGATGTTCGACTTGCCTCTCAACTATTTACTCTGATGGACTCAAATAAGCCAGCCTTTTCTGCACCAGATGTAGTTGTAGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCACTAAGAAGGTCTGGACGTTTTGATGCTGAAATCGAAGTTACTGTCCCAAATGAAGAGGACCGCTATCAAATTCTGAAGTTGTATACAAAGACAATTCCCTTGGATCCCAGTGTTGACTTAAAGTCTATTGCTGCGTTGTGCAATGGTTATGTTGGAGCTGATTTGGAGGCCTTGTGTCGTGAAGCCACCATGTTTGCAATCAAAAGATCCTCAAATGCAAAAGATGCTAGTAATTTCAGTCTAACAATGGAAGATTGGAAGAACGCAAGGTCTGTTGTTGGTCCAAGTATAACAAGAGGTGTTACTCTGGAAATTCCTAAAGTGACTTGGGAAGACATTGGTGGATTAAAAGATATAAAGAAAAAACTCCAGCAAGCTGTTGAATGGCCTATTAAGCATTCTGCTGCGTTTTCAAGATTAGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACCACCCTTGCCAAAGCGGCTGCACATGCTGCCCAAGCATCTTTCTTTTCCTTAAGTGGTGCAGAATTGTATTCGATGTATGTTGGAGAGGGGGAAGCTTTACTTCGCAAAACATTTCAGAGAGCACGCCTTGCAGCACCCAGTATAATATTCTTTGACGAGGCTGATGTGGTAGCTGCCAAACGGGGTGACAGTTCAAGCAATAGAGCTACAGTTGGAGAGAGACTTTTATCCACTCTGCTAACTGAGATTGATGGCTTAGAAGAAGCAAAAGGAATTCTTGTTTTAGCAGCTACAAATCGCCCCTATGCAATTGATGCTGCACTTATGCGTCCTGGGCGTTTTGATCAGGTTCTGTATGTACCACCACCTGATTTAGAGGGTCGATACGAGATACTTTGTGTTCATGCACGGAAGATGAAAACAGGGCATGATGTTGACCTCAGAAGGCTAGCAGAAGATACAGAGCTGTTTACAGGTGCTGAATTGGAGGGATTATGCAAGGAAGCTGGAATTGTAGCTCTAAGGGAAGACATATCTGCTGCAGTTGTTTTTGACCGCCATTTCCAGATTGCAAAGAGTTCTTTAAAACCCGCGTTAACAAAAGAAGAAATTGACTCGTACTCATCTTTCATGAAGACCTCATCTCGAGCTTTGCCTAGCCACTCTGAAGCAGGTTTGAAAGCAGACAAGGGCAGAAGGAACAGGTCAGATTCTTTATCTTTTGTCAAAATTGGGGTTGTCAGCTCTTTGTTATTGGCTGCTGCTGCTAAATACTATATCATGTATGGAGACCAAAGTGTACATCACATAGCTACCTGA 1827 0.4439 MESCTSNRSDNNNHWRAEEAIGGNTEALQALRELIIFPLHFSQEAQKLGLKWSRGLLLYGPPGTGKTSLVRAVVRECGAHLTIISPHSVRRAHAGESERILRDAFSEASSHVALGKPSVIFIDEIDALCARRDSKREQDVRLASQLFTLMDSNKPAFSAPDVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEDRYQILKLYTKTIPLDPSVDLKSIAALCNGYVGADLEALCREATMFAIKRSSNAKDASNFSLTMEDWKNARSVVGPSITRGVTLEIPKVTWEDIGGLKDIKKKLQQAVEWPIKHSAAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRKTFQRARLAAPSIIFFDEADVVAAKRGDSSSNRATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDQVLYVPPPDLEGRYEILCVHARKMKTGHDVDLRRLAEDTELFTGAELEGLCKEAGIVALREDISAAVVFDRHFQIAKSSLKPALTKEEIDSYSSFMKTSSRALPSHSEAGLKADKGRRNRSDSLSFVKIGVVSSLLLAAAAKYYIMYGDQSVHHIAT* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00569 608 CDD RecA-like_CDC48_NLV2_r1-like 20 190 - -
Phac3g00569 608 FunFam spermatogenesis-associated protein 5-like protein 1 459 545 - -
Phac3g00569 608 FunFam Cell division control protein 48 homolog B 193 274 - -
Phac3g00569 608 PANTHER AAA-FAMILY ATPASE 17 550 - -
Phac3g00569 608 FunFam Cell division control protein 48 homolog B 13 191 - -
Phac3g00569 608 ProSitePatterns AAA-protein family signature. 428 446 IPR003960 GO:0005524|GO:0016887
Phac3g00569 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 274 IPR027417 -
Phac3g00569 608 CDD RecA-like_CDC48_r2-like 296 456 - -
Phac3g00569 608 Gene3D - 460 551 - -
Phac3g00569 608 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 60 79 - -
Phac3g00569 608 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 406 425 - -
Phac3g00569 608 Pfam ATPase family associated with various cellular activities (AAA) 325 457 IPR003959 GO:0005524|GO:0016887
Phac3g00569 608 Pfam ATPase family associated with various cellular activities (AAA) 56 190 IPR003959 GO:0005524|GO:0016887
Phac3g00569 608 Gene3D - 275 459 IPR027417 -
Phac3g00569 608 Pfam AAA+ lid domain 214 256 IPR041569 -
Phac3g00569 608 Pfam AAA+ lid domain 480 524 IPR041569 -
Phac3g00569 608 SMART AAA_5 321 460 IPR003593 GO:0016887
Phac3g00569 608 SMART AAA_5 52 194 IPR003593 GO:0016887
Phac3g00569 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 544 IPR027417 -
Phac3g00569 608 Gene3D - 8 191 IPR027417 -
Phac3g00569 608 FunFam Cell division control protein 48-B-like protein 275 459 - -
Phac3g00569 608 Gene3D - 193 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00569 Phac-Chr3 4575349 4587631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00569 256 552 Calmodulin-binding Proteins AT3G56690 46.128 1.71e-82 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00569 - - vra:106755317 1082.4