Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00544 ATGGCGATGACGCAAGGGGTGCAGAAGAACACGCTCTACGTGGGAGGGTTAGCGGAGGAGGTCAACGAGTCAATCCTCCACGCCGCCTTTATCCCCTTCGGCGACATCAAGGACGTCAAGACGCCACTCGACCAGGCCACGCAGAAGCACCGCTCATTCGGCTTCGTCACCTTCCTCGAACGAGAAGACGCCACCGCCGCCATGGACAACATGGACGGTGCCGAGCTCTACGGCCGCGTCCTCACCGTCAACTACGCCCTCCCCGAACGCATCAAAGGCGGTGAACAGGGCTGGGCCGCCCAACCTATTTGGGCGGATGCCGATACCTGGTTTGAGCGGCAGCAGCAGGAGGAGGAGATGCGGCGGATTGAGGCCGAGAATCGGGCGGCGATGCAGGCGGCGGAGGACTTGCACCGGAAACAAGTGGCGGAACAGCGAGAGGGAGAGAAGGAAGAGGAAAGTGAGATGAAGGAGGATCCTATGGCCAAGGCTGAAGCTGAGGTTCTACAACAATAG 516 0.6066 MAMTQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDATAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDLHRKQVAEQREGEKEEESEMKEDPMAKAEAEVLQQ* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00544 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Phac3g00544 171 PANTHER ATPASE E1 2 171 - -
Phac3g00544 171 MobiDBLite consensus disorder prediction 131 164 - -
Phac3g00544 171 Coils Coil 113 159 - -
Phac3g00544 171 Gene3D - 2 130 IPR012677 -
Phac3g00544 171 SMART rrm1_1 11 84 IPR000504 GO:0003723
Phac3g00544 171 FunFam Peptidyl-prolyl cis-trans isomerase 2 155 - -
Phac3g00544 171 MobiDBLite consensus disorder prediction 131 171 - -
Phac3g00544 171 CDD RRM_PPIE 12 86 IPR034168 GO:0003723
Phac3g00544 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Phac3g00544 171 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00544 Phac-Chr3 4340333 4341939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00544 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.84e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00544 - - gmx:100809447 298.13