Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00529 ATGGAATCTTGGAGTTATGTCCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTATGAGAAGTCGAAGAACATTGGTTGAATGGGACAACAAATCCAACTTTGAGAGAGATGGATTTAATTCAGACAGAGAGGTAGTTAAAAGCATGGAGTTTGTGGACTTGGGATTCCCTGACTTGTTGCAGAAGTCTTTTCATGGTAGCCAACCTCTAGAGACTTCAAGCTATGAACTAGATAGTAATTCTAGTAAAAGAGGGAATTCCTCCACACATGTCATTGCTTTGGATTCTACTATGGGGGAAGAAGAATCTGATTCAAAGCATTTAAGTTCTCCAGTTGAAGCAAAGATTCATGATTCTTCACTGATTGATCTGAAGCTAGGGAGATTAGCAGATTGTAAAGGTGCAAGCAGTGATAAAGTTACAAAAGAAGGGTTTACTTTGACATCTATACATCAAACCACGCTTTCAAAGAGAGCTCGCACTTCCAGCTTATCTGCACAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGCTCACTCCAAAACAGCCAAAGTTATTGTAAATGGCCTTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATGTGCTAGCTGAGTTTGATGATGGCAAGCGCAGTTGTCGCAGGCGCCTAGCGGGACACAATGAACGCCGGAGGAAACCTCAATTTGATTACATGACTGGTAAACAGCACAAGATTCTTCAATCATATCAAGGTACCAAGTATCTTGGGTCCTCATTACAGAACAAACCCCAGTTTCCCTTTCAAAACATATTCCAAAGTGGCATCCTTTTCCCTGGAAAGCATGCTCAGAATTCTCAGAACGGACGCATCAAACTGGAAGAGGATTCCTTGTACAGTTCCCAACTTGCTGCACCCGTCACACTTGGTCAGGAATTATCAAGCTGTGCTCTCTCTCTTCTGTCAGACCAGTCACAGTATCCATCACGCCATGCAGCAGGATATCCATTAGCCAGTTCCCCAATCCTTCACGGCATTCACATTCAAGACAGAGATGACTTAGTTTCCGAAACATCTTTGAGGATAACAAGTTCTGCAGATAAATATGCCCCAAATGAGTCCTTTCCATGCAACACAGCCTCTAAGGAAGTTATCAAGAATCAATCCGCACCATTCTCTAGTGCTGGTCATGCTCTTCAAGACCATCATGGAGATGATATTTGCCAACCATCAGACTTGTTCGATGTCAAACATCGTCTTTCCTCGGAACATGGAGCTACAGTTGATCTGTTCCAGTTGTCCTCACATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTGAAGTGGGAAAATGAGGACTACTGTTTCCCAACTGTATGA 1443 0.4241 MESWSYVPEEKGYLFSDEMDFSLDAFMRSRRTLVEWDNKSNFERDGFNSDREVVKSMEFVDLGFPDLLQKSFHGSQPLETSSYELDSNSSKRGNSSTHVIALDSTMGEEESDSKHLSSPVEAKIHDSSLIDLKLGRLADCKGASSDKVTKEGFTLTSIHQTTLSKRARTSSLSAQAPVCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGLEQRFCQQCSRFHVLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILQSYQGTKYLGSSLQNKPQFPFQNIFQSGILFPGKHAQNSQNGRIKLEEDSLYSSQLAAPVTLGQELSSCALSLLSDQSQYPSRHAAGYPLASSPILHGIHIQDRDDLVSETSLRITSSADKYAPNESFPCNTASKEVIKNQSAPFSSAGHALQDHHGDDICQPSDLFDVKHRLSSEHGATVDLFQLSSHLQRVEQQRNSVLVKWENEDYCFPTV* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00529 480 Pfam SBP domain 179 252 IPR004333 GO:0003677
Phac3g00529 480 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 113 465 IPR044817 GO:0003677
Phac3g00529 480 SUPERFAMILY SBT domain 177 258 IPR036893 GO:0003677|GO:0005634
Phac3g00529 480 FunFam Squamosa promoter-binding-like protein 14 170 240 - -
Phac3g00529 480 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Phac3g00529 480 Gene3D - 169 240 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00529 Phac-Chr3 4156227 4162360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00529 1 478 SBP-box Gene Family AT1G69170 35.050 3.70e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac3g00529 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00529 - - vum:124825483 918.687