Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00519 ATGGGTTGCTGCATGTCTTGTCTTACGGGAAGACAACATCCTGAGGATGAGAATGAGAGAAGTGATGATCACAATGCCACTCACTTTACTCAAGAAGACCCACTTCCTCTCTCTACACACGGGTATGAAAAGTTATATGAGGCGGAAGCTGGTGGAGTCAACCGTCGTCCGAGCTATTCAGAATACACTCATACTCTATACTCTCCATCCTCCACCGCCGACGAGGATATCTGTCCTACATGTTTTGAAGAATATTGCGAAGAAAATCCTAAAATTACAGCAAAGTGCAATCATCATTATCACCTTGGGTGTATATACGAGTGGAAGGAGAGAAGTGAAACTTGTCCAACTTGTAGGAAGGTGCTTCATTTTTCTGAATCATAG 384 0.4323 MGCCMSCLTGRQHPEDENERSDDHNATHFTQEDPLPLSTHGYEKLYEAEAGGVNRRPSYSEYTHTLYSPSSTADEDICPTCFEEYCEENPKITAKCNHHYHLGCIYEWKERSETCPTCRKVLHFSES* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00519 127 MobiDBLite consensus disorder prediction 12 29 - -
Phac3g00519 127 SMART ring_2 78 118 IPR001841 -
Phac3g00519 127 SUPERFAMILY RING/U-box 61 124 - -
Phac3g00519 127 MobiDBLite consensus disorder prediction 12 37 - -
Phac3g00519 127 Pfam RING-H2 zinc finger domain 75 119 IPR024766 GO:0008270
Phac3g00519 127 ProSiteProfiles Zinc finger RING-type profile. 78 119 IPR001841 -
Phac3g00519 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 123 IPR013083 -
Phac3g00519 127 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 25 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00519 Phac-Chr3 4035070 4036854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00519 13 127 C3H Transcription Factor Family AT5G15790 42.975 3.76e-24 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00519 - - pvu:PHAVU_003G039100g 254.988