Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00479 ATGTCTTCCGCTAAGAACAAGGGAAACGCTGTCGGCGCCAAAACGGCACGAGCGTGCGACAGCTGCATGAGAAATCGAGCGCGTTGGTACTGTGCCGCCGACGACGCGTTCCTCTGCCAAGCTTGCGACTCTTCCGTTCACTCAGCGAACCCATTAGCGCGTAGACACAACCGCGTTCGCTTGAAAATCGTTTCATACATCGAAGCTAACAATAAATCATTTTCTGGAATGGGTAACGGTCCATCGTGGCACAAAGGGTTCACCAAGAAACCCCGAACGCCACGTCACGGGAAGAACGCTAATAAGGCTCTGAAGAATCCCTTCGATGTGGTACCCGAAGACACAAATTCGAACTCCCATGAAGAGAGCGTGGATGAGGTTCTTTATAGAGTGCCCGCAACTCCTTCGGCAGAGCAAGGGGTATCCGTGAGCGATGAGAGGAAAGTTGATTTGTTAGGATGTGAAAGCGCGTTTGAGATTGCTGAGTTTAGTGCTGATGTTGAGAGTTTGTTGAGGGAGGGACTGGAGAGTGAGTTTGTGGGAATGGAAGAGTTGGGGCTGGTGGGTACCAATGAGGTGGAGGAGCATGCTTCGTGGGAGTGTTGTGTGGGTGGTGGGAATATGAAGGTGGAGGAAAAGGTTATTGGGTTGGATAAGAGGCAAGAAGTAGTGAAAGAGGATGATCAGCGAAAGAAGAAGAAGATCTTATTGTTGCGGTTAGATTATGAGGCTGTAATCACTGCTTGGACCAGCCAAAGCTCGCTGTGGACTACTGCTCATAAACCAGACTTGGCCACCACGCACTTCTGGCCTCATTGCATGAGAACGTATGGAGTGGAGTTTGAGCATCCTTGTGGGGAATTGTTTGGGTGTGATTCAGGAAAGGTAGACGGTGGAAGAGAAGCAAGAGTGTCAAGATATAGAGAAAAGCGACGTAAAAGGTTGTTCTCGAAGAAAATAAGGTATGAGGTTCGAAAATTGAATGCTGAGAAAAGACCAAGAATGAAAGGGAGGTTTGTAAAGAGGCCTTCTTTAGCAACACCACCCACTTTTCCTTTGCTAAACAAAAAAGAAGAGAGAGTATAA 1086 0.4807 MSSAKNKGNAVGAKTARACDSCMRNRARWYCAADDAFLCQACDSSVHSANPLARRHNRVRLKIVSYIEANNKSFSGMGNGPSWHKGFTKKPRTPRHGKNANKALKNPFDVVPEDTNSNSHEESVDEVLYRVPATPSAEQGVSVSDERKVDLLGCESAFEIAEFSADVESLLREGLESEFVGMEELGLVGTNEVEEHASWECCVGGGNMKVEEKVIGLDKRQEVVKEDDQRKKKKILLLRLDYEAVITAWTSQSSLWTTAHKPDLATTHFWPHCMRTYGVEFEHPCGELFGCDSGKVDGGREARVSRYREKRRKRLFSKKIRYEVRKLNAEKRPRMKGRFVKRPSLATPPTFPLLNKKEERV* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00479 361 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 4 344 - -
Phac3g00479 361 SMART bboxneu5 14 61 IPR000315 GO:0008270
Phac3g00479 361 MobiDBLite consensus disorder prediction 78 125 - -
Phac3g00479 361 MobiDBLite consensus disorder prediction 333 361 - -
Phac3g00479 361 Pfam CCT motif 300 342 IPR010402 GO:0005515
Phac3g00479 361 CDD Bbox1_BBX-like 18 61 - -
Phac3g00479 361 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Phac3g00479 361 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Phac3g00479 361 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00479 Phac-Chr3 3603340 3604834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00479 5 342 C2C2-CO-like Transcription Factor Family AT1G25440 41.832 2.93e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phac3g00479 zf-B_box 8.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00479 - - vun:114173052 524.628