Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00477 ATGTGTCCTTTCTCTCAGTATTCCACTGCACACAGAAGAACCATGAAGATTAGTTGTAATGGGTGTCGCATTCTTCGCAAAGGTTGTACTGAGGACTGTGTTATTAGGCCATGCCTTGAATGGATAAACTCTTCTGAGGCACAAGCCAATGCCACCCTTTTCCTTTCTAAGTTCTATGGTCGTGCCGGTTTGCTCAACCTCATCAATGCTGCCCCACAACACCATCGCACTGGTGATTTTCCCTCACCATTATATGTGTTCAAGTCACTGATGTATGAGGCGTGTGGGAGAATCATGAACCCAACATTTGGATCAGTAGGTTTGTTTTGGAGTGGTGAGTGGGCCCAATGCCAAGCTGCTGTTGATGCTGTGCTAGCTGGGTCCCAGATCAATGTGATGACAAGTTCTCATTCACAAGTGATGGTGGCACATGGCAGTGAGTATGCTTCCAAACTCCTTGACATACGTCATGTTGTCAAAGATGCCAACATGGACAAGGTAAAAGGAAAATCTAAGAAGCCCAAAAGAACTGAGAATGTTATCATGCCAATGTCTCATGTGGGTTTGGTCAACTCAGCTACATTATGGAACCCAATTTTAAGCCATGAGCCAAGAAGGTTAGAGGGTGGTGGTGAGGAAATAGTGAGGGCTATGTTGTTGAGCCAAGACAAGCCAAGTATTGATTTGGAGCTCACTCTTGGCTAG 705 0.4539 MCPFSQYSTAHRRTMKISCNGCRILRKGCTEDCVIRPCLEWINSSEAQANATLFLSKFYGRAGLLNLINAAPQHHRTGDFPSPLYVFKSLMYEACGRIMNPTFGSVGLFWSGEWAQCQAAVDAVLAGSQINVMTSSHSQVMVAHGSEYASKLLDIRHVVKDANMDKVKGKSKKPKRTENVIMPMSHVGLVNSATLWNPILSHEPRRLEGGGEEIVRAMLLSQDKPSIDLELTLG* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00477 234 Pfam Lateral organ boundaries (LOB) domain 18 124 IPR004883 -
Phac3g00477 234 ProSiteProfiles LOB domain profile. 17 130 IPR004883 -
Phac3g00477 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 17 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00477 Phac-Chr3 3596554 3598061 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00477 15 203 AS2 family AT3G02550 48.223 3.66e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phac3g00477 LOB 4.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00477 - - vum:124830139 350.132