Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac3g00451 | ATGTTGATGAAATACTTGGCTCAATTCTACTCTCATATCAAATGGGTGTTGGATTTCCTTCTCTTTTTCCCTTTCTATAAGCTCCATGATTCTCAAATGCCAATGATTGCAGAAGACCAAAGCATATGCTACTATGAACACACCCCTGACACAGAGGAAGAAGATGATGACTGTGCTGTTTGTCTGAGCAAAATTGGAGATGGTGAAGAGATTAGAGTGCTCAGATGTCAACATTTCTTTCACAGAAACTGCTTGGATCAATGGGTTGCTCTCAAAAACGCATCTTGCCCTCTTTGCAGAGAGCCAGTTAGGTCAAGAAGAGCCATGAATGAGGTTGGAGCTGAAGTTTTGTGGTTTCAATTTTGCTCTGTACACACTAATGAATCTGACAGATGGTGGCTACGTTGA | 408 | 0.4142 | MLMKYLAQFYSHIKWVLDFLLFFPFYKLHDSQMPMIAEDQSICYYEHTPDTEEEDDDCAVCLSKIGDGEEIRVLRCQHFFHRNCLDQWVALKNASCPLCREPVRSRRAMNEVGAEVLWFQFCSVHTNESDRWWLR* | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac3g00451 | 135 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 110 | IPR013083 | - | |
| Phac3g00451 | 135 | SMART | ring_2 | 58 | 99 | IPR001841 | - | |
| Phac3g00451 | 135 | ProSiteProfiles | Zinc finger RING-type profile. | 58 | 100 | IPR001841 | - | |
| Phac3g00451 | 135 | PANTHER | - | 31 | 109 | - | - | |
| Phac3g00451 | 135 | SMART | ringv_2 | 57 | 100 | IPR011016 | GO:0008270 | |
| Phac3g00451 | 135 | SUPERFAMILY | RING/U-box | 43 | 108 | - | - | |
| Phac3g00451 | 135 | Pfam | Ring finger domain | 56 | 100 | IPR001841 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac3g00451 | 54 | 103 | C3H Transcription Factor Family | AT1G80400 | 48.000 | 8.25e-14 | 65.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac3g00451 | K16282 | - | vvi:104878965 | 115.931 |