Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00450 ATGGAGAAAGATCACAACTATTCGGCACCAATATCCATGCCTCCAAGCTTCAACACACTTGACTACTCTCTAGATCACCACCACCAACACCACCTTTACCCACCAAATCAGCATCAACAGCACCTCATGAAGTTCCAAGCTTCTGGAGATGAAAACAACAGTGGATCAATGGTGGATTACATGCCTCAAACACCACCACCACCCCATGGTTTTTATGGCGGTTCTAGCACTGGCACAATATCCTATGATAAGTTGAGTTTTGCAGACGTGATGCAGTTTGCAGATTTTGGACCTAAGCTGGCTTTGAATCAAACAAAAAGCTGCGAAGAATCTGGGTTAGATCCAGTTTACTTTCTCAAGTTTCCAGTGTTGAACGACAAGATGGAGGAGGAGGAGAACCTGATGGTGAATGATGACCCTGATGGTGATGCAGAGAATCATGATGAGAGGTACAACTTGGTGGATGTGGAGGAGAAGTCAAGGGTTGATGAAGAGGGAATGATGATGAGAGAAGATGAAGAGACTCGGATTTCTGATGACAACAATTCCGTGCAGATTCGGTTTGTTGGTCAGGAAGAGACTCAGAAGAATGCAGGAGTGCAGGAAAGCAAGAGCAAGAGGAAGAGACCAAGAACTGTTAAGACAAGTGAAGAAGTTGAGAGCCAGCGCATGACCCACATAGCAGTTGAAAGGAATCGTAGGAAGCAAATGAATGAGCATCTTCGTGTTCTTAGATCACTCATGCCTGGTTCATATGTCCAAAGGGGTGATCAAGCTTCAATAATTGGGGGAGCAATAGAGTTTGTGAGGGAATTGGAGCAACTGCTTCAGTGTTTGGAGTCACAAAAGAGGAGGAGGCTACTGGGAGAAGCTCAAGCAAGACAAGTTGGGGACCCCTCCCTTGCACAACAACAACCTCCTTTCTTTCCACCATTGCCAATTCCGAATGAGCAGATGAAGCTTGTGGAGTTGGAGACTGGACTTCGTGAAGAAACAGCAGAGAGCAAGTCTTGTTTGGCTGATGTTGAAGTGAAGCTTCTGGGATTTGATGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAAACCATTGCTGCACTTGAAGATCTGCAACTAATAATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCAGCGCAGAAGATATAGCAAGTTCGGTTCAGCAGATATTCAATTTTATCCATGCAAACACTAGCATGTGA 1281 0.4473 MEKDHNYSAPISMPPSFNTLDYSLDHHHQHHLYPPNQHQQHLMKFQASGDENNSGSMVDYMPQTPPPPHGFYGGSSTGTISYDKLSFADVMQFADFGPKLALNQTKSCEESGLDPVYFLKFPVLNDKMEEEENLMVNDDPDGDAENHDERYNLVDVEEKSRVDEEGMMMREDEETRISDDNNSVQIRFVGQEETQKNAGVQESKSKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGDPSLAQQQPPFFPPLPIPNEQMKLVELETGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFSAEDIASSVQQIFNFIHANTSM* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00450 426 Gene3D - 212 287 IPR036638 GO:0046983
Phac3g00450 426 FunFam Basic helix-loop-helix transcription factor 212 287 - -
Phac3g00450 426 PANTHER TRANSCRIPTION FACTOR FAMA 128 417 IPR044283 GO:0003700|GO:0010052
Phac3g00450 426 MobiDBLite consensus disorder prediction 199 223 - -
Phac3g00450 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 272 IPR011598 GO:0046983
Phac3g00450 426 SMART finulus 227 278 IPR011598 GO:0046983
Phac3g00450 426 MobiDBLite consensus disorder prediction 190 223 - -
Phac3g00450 426 Pfam Helix-loop-helix DNA-binding domain 222 273 IPR011598 GO:0046983
Phac3g00450 426 CDD bHLH_AtFAMA_like 224 291 - -
Phac3g00450 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 221 287 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00450 Phac-Chr3 3333165 3336344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00450 47 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 59.036 1.67e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac3g00450 HLH 9.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00450 K26213 - gmx:100813515 684.871