Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00448 ATGGCTTCCAAACCCCGCACAGTTGAAGAGATCTTCAGGGATTTCAGAGCCCGAAGAAACGCTATTATTCGCGCACTCACTCACGACGTTGATGAATTTTACGGACTCTGTGATCCAGGTAAAGAAAACTTGTGCCTCTATGGACATCCAAACGGGGTCTGGGAGGTAGCTCTGCCATCGGAGGAAGTTCCACCGGAGCTCCCTGAGCCAGCTCTTGGAATCAACTTTGCCAGGGACGACCTGAGCCGCAAGGACTGGCTTTCTCTTGTTGCTGTGCATAGTGATTCATGGTTGCTTGCAGTGGCCTTTTACCTTGGAACTCGGCTTAACCACAATGAAAGAAAACGCCTATTTGGTTTGATCAATGCTCTTTCCACCGTTTTTCAAGTTGCAAGTGGCAATAAACCAATTAAGGAAAAGCTCACCATGGATAGTGGAAGCAAGTCTGGTGTAACCATCGAGGTAGCATTGAAAGGTGAGCAGGTTAGAATATTTTGTGGAAGCTGTGGTGAAAAGTACAATGGAGATGAACTTTGGATGGGGTGCGATATATGTGAGTGGTGGTACCATGGAAAGTGTGTTATGATCAACCCTGCAAAGGCTGACACCATAAAACGGTACAAATGTCCATCATGCAGCTTGAGGAGGAGCAGATCATAG 660 0.4697 MASKPRTVEEIFRDFRARRNAIIRALTHDVDEFYGLCDPGKENLCLYGHPNGVWEVALPSEEVPPELPEPALGINFARDDLSRKDWLSLVAVHSDSWLLAVAFYLGTRLNHNERKRLFGLINALSTVFQVASGNKPIKEKLTMDSGSKSGVTIEVALKGEQVRIFCGSCGEKYNGDELWMGCDICEWWYHGKCVMINPAKADTIKRYKCPSCSLRRSRS* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00448 219 SMART PHD_3 165 213 IPR001965 -
Phac3g00448 219 CDD PHD_AL_plant 165 215 IPR044104 -
Phac3g00448 219 ProSitePatterns Zinc finger PHD-type signature. 166 212 IPR019786 -
Phac3g00448 219 ProSiteProfiles Zinc finger PHD-type profile. 163 215 IPR019787 -
Phac3g00448 219 FunFam PHD finger alfin-like protein 158 214 - -
Phac3g00448 219 PANTHER CPG BINDING PROTEIN 4 218 IPR045104 GO:0006355|GO:0042393
Phac3g00448 219 Pfam Alfin 7 131 IPR021998 GO:0006355|GO:0042393
Phac3g00448 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 219 IPR013083 -
Phac3g00448 219 Pfam PHD-finger 165 213 IPR019787 -
Phac3g00448 219 SUPERFAMILY FYVE/PHD zinc finger 164 216 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00448 Phac-Chr3 3313018 3315807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00448 2 218 Alfin-like Transcription Factor Family AT5G05610 60.593 3.10e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac3g00448 Alfin 5.7e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00448 K26274 - pvu:PHAVU_003G033700g 427.557