Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00446 ATGCTAGTAAATTTCAAAGCCTTAAAAATCCCTTCTTCACTCTGTGATCACAGTTCAACATCTATGAGTTCACCAACCAACCTCTCTTCCACTGTAGTTCATTTCTGTAAGATTATCCTCAGACCAAACCTTGCACATGGAATACTTAATCTCCCAAAAATGTTCACTAGAAAACATGGAGATGGAATGTCAAATCCTGTGTTTCTTAGATCTCCTGATGGTACTGAATGGAAAATATACTGGGCCAGGAGTGATGGTGAGATTTGGTTTCAAAATGGATGGAAGGAGTTTGCCACATACTATTCTCTAGATCATGGCCACTTGCTGTTCTTTGAATACCAGGGAACTTCTCATTTTCAAGTACACATATTTGACAATAGTGCCCTTGAAATAGACTATCCTTCCCACACTACTCATTCTAGAAAGGAAAATCTTGTCCACATTTCTGATGATTCTGATGAACTTTTGTTGGAGCAATTTTCATGTCAAAATGCTAGAGTGAAACCAAATCTGTCTTCTCCTCAACCTTGTAAGAAAATGAAAAATAGCATAACTACAAATGTTGTGAGAAGCCCCAACTGGGTACATTTGCATCAGCATGTCCAAACTAAAAGTCCTAGCTTTCAAGAGGAAAAATCTATTAAGCAAAAATTACATGAAGTTAAAGGTAAACACACTTTTAACAGTGAATGCTCAAAAGTGGAGCAGTTAACATCTACGGCTTTAAAGAAAGCCATAACTTTCAGACCTGAACACCCCTTTTTCCTGCTTGTCATGAAGGAGTCCTTGATTAAAAGATATTACCTGAAAATACCACCACATTTTGTAGAAAAATATTTGAAGAACACACGTGAAGTTGTCAACCTTGAGGTATTGGATGGGAGAACATGGCCTGTTATTTATTCTGCTCCTAGAATTATTGGGGGGTGGAAGAAATTTGCATCAGAAAACAATTTGAATGTGGGGGATGTTTGTGTTTTTGAGATGATCCGGAGGATCCAAGGCCTTGCTTTCATAGTTTCAATCTTTCGAGGTGCAGAGGAACCAAGTTGCCCCATTTCACAAGTTCTAGCCAAAGATTTTCAGTTGGAAAGTGACTTCAAGTCAAAGATGTTAACCAGAGCTCATAAAGAAGCTAGCAAATTCAAATCAGAAAATCCCTTTTTCATGGTTACTTTACAATCAAAGGAAAACACAACCAGATACCTGTGTGTGCCTATCTACTTTGCAAGGAAGTATTTTATAAACTTTAATCAGAATGTGATGATGATACAGTTTAGAAACAAATTGTGGCCTGTGAAGTTTGTGTGTAATTCTTCATCTTCAGCTAAGTTCAGTGCTGGTTGGGCCTTATTTGCAAGAGAAAACAACCTGAAACCTGGAGATATTTGTGTCTTTGAGCTAGTCAATAGAAAAGATGCAACACTAGTTGTTCATGTTTTCAGAAGTCATGGTAATTAA 1461 0.3737 MLVNFKALKIPSSLCDHSSTSMSSPTNLSSTVVHFCKIILRPNLAHGILNLPKMFTRKHGDGMSNPVFLRSPDGTEWKIYWARSDGEIWFQNGWKEFATYYSLDHGHLLFFEYQGTSHFQVHIFDNSALEIDYPSHTTHSRKENLVHISDDSDELLLEQFSCQNARVKPNLSSPQPCKKMKNSITTNVVRSPNWVHLHQHVQTKSPSFQEEKSIKQKLHEVKGKHTFNSECSKVEQLTSTALKKAITFRPEHPFFLLVMKESLIKRYYLKIPPHFVEKYLKNTREVVNLEVLDGRTWPVIYSAPRIIGGWKKFASENNLNVGDVCVFEMIRRIQGLAFIVSIFRGAEEPSCPISQVLAKDFQLESDFKSKMLTRAHKEASKFKSENPFFMVTLQSKENTTRYLCVPIYFARKYFINFNQNVMMIQFRNKLWPVKFVCNSSSSAKFSAGWALFARENNLKPGDICVFELVNRKDATLVVHVFRSHGN* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00446 486 ProSiteProfiles B3 DNA-binding domain profile. 254 346 IPR003340 GO:0003677
Phac3g00446 486 PANTHER B3 DOMAIN-CONTAINING 369 480 - -
Phac3g00446 486 ProSiteProfiles B3 DNA-binding domain profile. 34 127 IPR003340 GO:0003677
Phac3g00446 486 Gene3D - 368 484 IPR015300 -
Phac3g00446 486 Gene3D - 234 347 IPR015300 -
Phac3g00446 486 SMART B3_2 254 346 IPR003340 GO:0003677
Phac3g00446 486 SMART B3_2 35 127 IPR003340 GO:0003677
Phac3g00446 486 SMART B3_2 388 484 IPR003340 GO:0003677
Phac3g00446 486 CDD B3_DNA 388 482 IPR003340 GO:0003677
Phac3g00446 486 SUPERFAMILY DNA-binding pseudobarrel domain 249 344 IPR015300 -
Phac3g00446 486 Gene3D - 27 128 IPR015300 -
Phac3g00446 486 Pfam B3 DNA binding domain 254 345 IPR003340 GO:0003677
Phac3g00446 486 Pfam B3 DNA binding domain 42 126 IPR003340 GO:0003677
Phac3g00446 486 Pfam B3 DNA binding domain 388 483 IPR003340 GO:0003677
Phac3g00446 486 ProSiteProfiles B3 DNA-binding domain profile. 388 484 IPR003340 GO:0003677
Phac3g00446 486 CDD B3_DNA 253 344 IPR003340 GO:0003677
Phac3g00446 486 CDD B3_DNA 34 125 IPR003340 GO:0003677
Phac3g00446 486 SUPERFAMILY DNA-binding pseudobarrel domain 28 127 IPR015300 -
Phac3g00446 486 SUPERFAMILY DNA-binding pseudobarrel domain 382 484 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00446 Phac-Chr3 3282812 3285976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00446 374 482 B3 DNA Binding Superfamily AT3G18990 40.179 5.07e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac3g00446 B3 2.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00446 - - ccaj:109791753 546.969