LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac3g00394	ATGAGTTGCAATGAGGAAACTTCTAATGGTAGTCTCAACATTAGGGCTTTAATGTGCAACGCTGCTGCTGGTGCCTCTGCTGGGGCAATAGCGGCTACATTTGTGTGCCCGTTGGATGTGATCAAGACTAGGCTACAAGTCCACGGGCTTCCTCATGGGCAGAAAGGTAATGTTATTGTGACAAGCTTGCAAAATATAGTAAAGAAAGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATACTAGCGTTACTTCCAAACTGGGCCGTTTACTTCACAAGTTATGAGCAAGTAAAGGGCCTGCTTCGTTCACACGATGGTTGCCAGGAACTCACAACTATTGGAAATATGATAGCTGCTGCTTCTGCAGGCGCAGCAACAGCCATTTCTACAAATCCATTATGGGTTGTTAAGACAAGACTTCAAACACAAGGAATGAGGACTGATGTTGTTCCTTACAAGAGTGTTCTTTCTGCTTTGACAAGGATTACACGTGAGGAAGGCATTAGAGGCCTATATAGTGGCATTATTCCTTCATTGGCTGGCATAAGTCATGTTGCAATTCAGTTTCCAGCATATGAAAAGATGAAGTCATACATGGCAGAAAAAGATAACACAACTGTTGATAAGCTAAGTCCTGGGAGTGTTGCCATTGCATCATCAATTTCAAAAGTGTTTGCCTCTGTAATGACTTACCCACATGAGGTAATACGATCGAGGCTGCAAGAGCAAGGGCAGGCAAAAAATAATGTGATCAGATATGCAGGGGTTATTGACTGCACTAGGAAGGTGTTTGAAAAGGAAGGGATTCCAGGGTTTTATCGTGGTTGTGCAACGAATCTCTTAAGAACAACTCCATCTGCTGTTATTACATTCACTAGTTATGAGATGATACGCAGGTTTTTGGAGGGAGTTGTACCCCAGGATAAGGGCTATCCACAAGCCTCTTCTAAGTCCAATCAACTCAACAAAGACAAACCCAGTACCACTGATCCGTCTCAGTCTAACACCAAACCTTCTTCAATTCCTCTCGGAAACAAAGAGCACCTAACAAGACATTGA	1068	0.4345	MSCNEETSNGSLNIRALMCNAAAGASAGAIAATFVCPLDVIKTRLQVHGLPHGQKGNVIVTSLQNIVKKEGFRGMYRGLSPTILALLPNWAVYFTSYEQVKGLLRSHDGCQELTTIGNMIAAASAGAATAISTNPLWVVKTRLQTQGMRTDVVPYKSVLSALTRITREEGIRGLYSGIIPSLAGISHVAIQFPAYEKMKSYMAEKDNTTVDKLSPGSVAIASSISKVFASVMTYPHEVIRSRLQEQGQAKNNVIRYAGVIDCTRKVFEKEGIPGFYRGCATNLLRTTPSAVITFTSYEMIRRFLEGVVPQDKGYPQASSKSNQLNKDKPSTTDPSQSNTKPSSIPLGNKEHLTRH*	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac3g00394	355	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-
	Phac3g00394	355	SUPERFAMILY	Mitochondrial carrier	18	299	IPR023395	-
	Phac3g00394	355	Pfam	Mitochondrial carrier protein	213	304	IPR018108	-
	Phac3g00394	355	Pfam	Mitochondrial carrier protein	112	204	IPR018108	-
	Phac3g00394	355	Pfam	Mitochondrial carrier protein	19	106	IPR018108	-
	Phac3g00394	355	Gene3D	Mitochondrial carrier domain	112	311	IPR023395	-
	Phac3g00394	355	Gene3D	Mitochondrial carrier domain	4	111	IPR023395	-
	Phac3g00394	355	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Phac3g00394	355	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Phac3g00394	355	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Phac3g00394	355	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Phac3g00394	355	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Phac3g00394	355	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	18	308	IPR044712	GO:0006862\|GO:0055085
	Phac3g00394	355	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	16	304	-	-
	Phac3g00394	355	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	303	IPR018108	-
	Phac3g00394	355	MobiDBLite	consensus disorder prediction	311	355	-	-
	Phac3g00394	355	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Phac3g00394	355	MobiDBLite	consensus disorder prediction	314	346	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac3g00394	Phac-Chr3	2813673	2818325	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac3g00394	33	349	Chloroplast and Mitochondria Gene Families	AT1G25380	64.565	1.96e-146	416

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac3g00394	K15115		-	gmx:100816376	592.808