Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00362 ATGGACTGCATGGATGAGAGCACTACCACTGAATCGCTCTCCATCAGCCTTTCTCCCACCATATCATCGGAGGACAAGCTGGTTCTGCCATCCAAGAACCCTTCTCCTCCTCCGCCCTCCAACACCCTGTGCCGCGTCGGCAGCGGCGCCAGCGCAATCGTGGATCCTGACGGCGGTGGGAACACCGAGGCGGAGTCCAGGAAGCTTCCGTCGTCCAAGTACAAAGGCGTCGTGCCGCAACCCAACGGACGCTGGGGCGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGGACCTTCAACGAGGAGGACGAGGCGGCCAGGGCGTACGACATCGCGGCGCAGCGCTTCCGCGGCAAGGACGCGGTCACCAACTTCAAGCCCGTCTCCGGCGGAGACGGCAACGACGACGACGGCGAGGCCGAGTTTCTGAACTCGCATTCCAAGTCGGAGATCGTCGACATGCTCAGGAAGCACACGTACAATGACGAGCTGGAGCAGAGCAAGCGCAGCCGCGGAGTCGTCCGGCGGCGCGGCGCAGGCGCCGGCGCCGGAACCGGGAACCCGATCTCCGGCGCGTGTTTTGTGAAGGCGCGTGAGCAGCTGTTCGAGAAGGCGGTTACGCCGAGCGACGTGGGGAAGTTGAACCGGTTGGTGATCCCGAAGCAGCACGCGGAGAAGCACTTTCCGCTGCAGAGCGTTAACGGCGTCAGCGCGACGGCGGCGAAGGGCGTTTTGTTGAACTTCGAAGACGTTGGGGGGAAAGTGTGGCGGTTCCGCTACTCGTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGTTGGAGCCGGTTCGTTAAAGAGAAGAATCTGAAAGCCGGTGACACGGTTTGCTTCCACCGGTCCACTGGACCGGACAAGCAGCTCTATATCGATTGGAAGGCGCGGAATAATAACGTTAACGAAGTTGGGTTGTTCGGAGCGGTCGGACCGGTGGTTGAACCGATTCAGATGGTTCGGCTCTTCGGCGTGAACATTTTGAAACTACCCGGTTCGGAGGCTAACAATAACAATAATGCAAGCGCAACCATTCCCGGGTTCTGCAATGGCAAAAGAAGAGAAATGGAGCTGTTTTCGTTAGAGTGTAGCAAGAAACCTAAGATTATTGGTGCTTTGTAA 1164 0.5851 MDCMDESTTTESLSISLSPTISSEDKLVLPSKNPSPPPPSNTLCRVGSGASAIVDPDGGGNTEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPVSGGDGNDDDGEAEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGVVRRRGAGAGAGTGNPISGACFVKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVNGVSATAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARNNNVNEVGLFGAVGPVVEPIQMVRLFGVNILKLPGSEANNNNNASATIPGFCNGKRREMELFSLECSKKPKIIGAL* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00362 387 SUPERFAMILY DNA-binding domain 72 128 IPR016177 GO:0003677
Phac3g00362 387 SUPERFAMILY DNA-binding pseudobarrel domain 202 307 IPR015300 -
Phac3g00362 387 Gene3D - 194 319 IPR015300 -
Phac3g00362 387 ProSiteProfiles B3 DNA-binding domain profile. 204 312 IPR003340 GO:0003677
Phac3g00362 387 MobiDBLite consensus disorder prediction 1 29 - -
Phac3g00362 387 SMART B3_2 204 312 IPR003340 GO:0003677
Phac3g00362 387 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700|GO:0006355
Phac3g00362 387 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Phac3g00362 387 Pfam B3 DNA binding domain 204 309 IPR003340 GO:0003677
Phac3g00362 387 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 68 356 IPR044800 GO:0003700
Phac3g00362 387 CDD AP2 72 130 IPR001471 GO:0003700|GO:0006355
Phac3g00362 387 MobiDBLite consensus disorder prediction 1 77 - -
Phac3g00362 387 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700|GO:0006355
Phac3g00362 387 CDD B3_DNA 203 297 IPR003340 GO:0003677
Phac3g00362 387 SMART rav1_2 73 134 IPR001471 GO:0003700|GO:0006355
Phac3g00362 387 FunFam AP2 domain-containing protein RAP2.8 72 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00362 Phac-Chr3 2515749 2518362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00362 3 387 B3 DNA Binding Superfamily AT1G25560 60.102 9.62e-147 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Phac3g00362 B3 3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00362 K09287 - gmx:100801107 598.586