Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00237 ATGTCATCACAAACCGCCGCGGCGGAGGCGCCGTTGCTCCGCAACCGCCAAGACGCGGCCCGAGCGCCTGCGCTGGCGCTCCTCCTCGGCCGCGCCGGCCGCCGAGGGCCATCCATGCTGGTGCGGGAGACGGCGGCGCGCGAGCTCGAGGAGCGCCGCGCGGACTGGGGCTACTCCAAGCCGGTGGTGGCGCTCGACATGTCGTGGAACATGGCGTTCGTCGTCGTCTCGGTGGTGATGCTCGCATGCACCATCGGCGAGCGGCCGAACTCGCCGATCCGCGTGTGGATCGTCGGGTACGGGCTGCAGTGCCTTGTGCATGTGGTGCTCGTCTGGCTCGAGTACCGGCGACGCAGCCGGAGAGACTCGCGCCGCGGCCAGGGGGCGCGGGACGTGGAGAGCCAAGCCGGAAGTGACAACGATGATGGGGGCAACGACAGCGACAGCGATGACGTCGATGGGAACTCTGGCAATTCGTCTCGCTCCCGGTTCACAAAGCGATGTGAATCATTAAATACTGGGATTTCATTCCTTTGGTGGATAGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATACTTCTGCAAGATGCCCCACGATTGTACTGGTTGTCTGTTGTCTTTCTGGCATTTGATGTCTTTTTTGCCATCTTTTGTGTTGTCTTGGCGTGCTTGATTGGTATTGCTCTTTGTTGTTGTTTGCCCTGCATCATTGCTATCCTCTATGCGGTTGCAGGACAGGAAGGTGCGTCAGAAGCAGATCTTAGCGTACTTCAAAAATACAGATTTCGAATACCAAGCAATGAGGATAAGTCCAGTGGTGGAGGTGGATCAATGGTTCCCATAGAAACCAGCAGTGCTTACTTGGCAACTGAACGAATACTTTTACCAGAGGATGCGGAATGCTGTATTTGCCTGTGTTCATACGAGGACGGAGCAGAGCTCCATGCTCTTCCTTGCAACCATCATTTTCATTCTTCATGCATAGTGAAATGGCTGAAGATGAATGCCACTTGTCCTCTCTGCAAGTACAATATTCTCAAGGGAAACGAACAAGTGTGA 1062 0.5574 MSSQTAAAEAPLLRNRQDAARAPALALLLGRAGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSVVMLACTIGERPNSPIRVWIVGYGLQCLVHVVLVWLEYRRRSRRDSRRGQGARDVESQAGSDNDDGGNDSDSDDVDGNSGNSSRSRFTKRCESLNTGISFLWWIVGFYWVVSGGDILLQDAPRLYWLSVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSVLQKYRFRIPSNEDKSSGGGGSMVPIETSSAYLATERILLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00237 353 SMART ring_2 302 342 IPR001841 -
Phac3g00237 353 Pfam Ring finger domain 301 343 IPR001841 -
Phac3g00237 353 SUPERFAMILY RING/U-box 289 347 - -
Phac3g00237 353 CDD RING-H2_PA-TM-RING 301 343 - -
Phac3g00237 353 PANTHER TARGET OF ERK KINASE MPK-1 32 351 - -
Phac3g00237 353 FunFam E3 ubiquitin protein ligase RIE1 282 350 - -
Phac3g00237 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 348 IPR013083 -
Phac3g00237 353 MobiDBLite consensus disorder prediction 124 163 - -
Phac3g00237 353 ProSiteProfiles Zinc finger RING-type profile. 302 343 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00237 Phac-Chr3 1647944 1655734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00237 2 352 C3H Transcription Factor Family AT1G68070 67.705 3.63e-174 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00237 - K13148 gmx:100816519 534.643