Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00214 ATGCCTCCGTCGCGTTCCGGCAGCGACGCATGCAAGGGCGGAGCGCCGGAGTTCCCGGCGGGGCTCCGGGTCTTGGTCGTCGACGATGACGCCACCACGCTCAGGATTATAGAGCAAATGTCAATTCGATGCCGTTACCGCGTTACCACATGCACTGAGGCTACTGTGGCTTTGAATCTTCTGCGCGAAAGGAAAGGTTGTTTTGATGTGGTACTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAGCTCCTTGAACATGTAGGGCTGGAAATGGACCTTCCTGTAATCATGATGTCTGGTGATAGTACAACAAGTGCTGTAATGAAGGGAATTAGACATGGGGCTTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAACTGCGGAATATATGGCAGCATGTTGTTAGGAAAATCTGGAATGAAAATAAAGAACATGATAATTCTGGCAGCATGGAAGACAGTGATTGGAATAAACGGGGGAATGATGATACTGAATATACTTCTTCTGTTGCTGATGCAGCAGAAGTAGTTAAAGGCCCAAAAAAGAGGAGCAGTTTAAAAGAAGAAGATATTGAATTGGAGAGTGATGATCCAGCTACATCTAAGAAGCCTCGTGTAGTGTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTTGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACTAGAGAAAATGTTGCAAGTCATTTACAGAAATTTAGACTTTATTTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGGGATGTTAAATGCAGTTCCTGGGACTATAGAATCCAAGCTGAATGCTACTGGAAGATTTGACATACAAGCTTTGGCTGCTGCTGGCCATGTTCCGCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCTTAGGTTGCCCTGCATCTAACATAATGTCTACAATGGACCAGGCTACCTTGCTGCAAGCATCCATTGGGCTAAAACATTCCCATGCTGAACATGCTGTGGCGTATGGTCAGCCTCTTGTAAAGCGTCCCAACATTGGCACGGATTTTCTTCCATCTGTCTTAACTGCGAATGATGTGTCGTCAGGATATGGTGCATGGCCATCATCTAATAATGCAATGGGTTCAGTGAGACCCAATAATACCGTTGAAAGAGTGGGTACTCAGAATAACAACATACTGATGGATATATTAGACCACCAGCAAAGGCAGCAACCCCAGCAAAAACAACAGCAGCACCACCAGCAAAAGCAACAGCAACAGCTACGGCAGCAGCCTCTGATACCTGATCAAAGTTGTTCAATCAATGTTCAACCATCTTGCTTGGTGGTTCCATCTCAATCCTCTGACACTCTACAGGCAGTAAATAGTTCTGCTTCTGTCGATCAGAATTGCAGTTTTGGCAGGAATGCCATTATTGATTATAGTTTATTGTCACAGAAATCAAATAATTCAGTTAGTGCATCTCAATTTCCCAGTAGTGACACAAAAGCTCAAGGTGTTTTGTATGGGTATACTACACCCTCCACTTGTTCTATGAGCTCCATCAATGGCAATATTCAGCAGCTTCAAAACTCAACTTTGACATTTGGTGCTGCAAGACCTTTGCCTAGCCCTTTGCCCATGTCTGATAGACAAGATCCCTATGGTTTCAAATCGGGTGATTCATTTGATCAAGTATGCCTTAGGAATATTGGGTTTATTGGCAAAGGTATCTGCATTCCAAATAGGTTTGTGCAAAATGAAATTGAATCATCTGTAAGTGATTTTAGTAAAATGAAAGTCAATGTAGATAGCAGTGGCAACACACTGAAGGAGGAGCCAAATTTTATAAATATGCAAAAAGTGAGTCGCCCAATCGTAGAAAGATATCAATCTTGTGATCATTCAAGTGTGTTTACTGAATAG 1950 0.4323 MPPSRSGSDACKGGAPEFPAGLRVLVVDDDATTLRIIEQMSIRCRYRVTTCTEATVALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKIWNENKEHDNSGSMEDSDWNKRGNDDTEYTSSVADAAEVVKGPKKRSSLKEEDIELESDDPATSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNAVPGTIESKLNATGRFDIQALAAAGHVPPETLAALHAELLGCPASNIMSTMDQATLLQASIGLKHSHAEHAVAYGQPLVKRPNIGTDFLPSVLTANDVSSGYGAWPSSNNAMGSVRPNNTVERVGTQNNNILMDILDHQQRQQPQQKQQQHHQQKQQQQLRQQPLIPDQSCSINVQPSCLVVPSQSSDTLQAVNSSASVDQNCSFGRNAIIDYSLLSQKSNNSVSASQFPSSDTKAQGVLYGYTTPSTCSMSSINGNIQQLQNSTLTFGAARPLPSPLPMSDRQDPYGFKSGDSFDQVCLRNIGFIGKGICIPNRFVQNEIESSVSDFSKMKVNVDSSGNTLKEEPNFINMQKVSRPIVERYQSCDHSSVFTE* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00214 649 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Phac3g00214 649 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 262 IPR017930 -
Phac3g00214 649 CDD REC_typeB_ARR-like 24 138 - -
Phac3g00214 649 FunFam Two-component response regulator 202 265 - -
Phac3g00214 649 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Phac3g00214 649 Gene3D - 202 265 - -
Phac3g00214 649 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 422 IPR045279 GO:0009736
Phac3g00214 649 SMART REC_2 22 134 IPR001789 GO:0000160
Phac3g00214 649 SUPERFAMILY CheY-like 21 145 IPR011006 -
Phac3g00214 649 FunFam Two-component response regulator 22 159 - -
Phac3g00214 649 MobiDBLite consensus disorder prediction 147 165 - -
Phac3g00214 649 MobiDBLite consensus disorder prediction 147 202 - -
Phac3g00214 649 MobiDBLite consensus disorder prediction 179 202 - -
Phac3g00214 649 Pfam Myb-like DNA-binding domain 208 256 IPR001005 -
Phac3g00214 649 MobiDBLite consensus disorder prediction 415 440 - -
Phac3g00214 649 Pfam Response regulator receiver domain 24 133 IPR001789 GO:0000160
Phac3g00214 649 Gene3D - 22 156 - -
Phac3g00214 649 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00214 Phac-Chr3 1521839 1528207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00214 56 320 Response Regulator Gene Family AT3G16857 55.986 5.19e-90 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phac3g00214 Response_reg 1.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00214 - K14491 pvu:PHAVU_003G0170001 1143.26