Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00208 ATGGATCACCCAAATCCACCACACTCCACCACACCCAAACACGCTTCCGATTCGCTCCGCCGCGCCACTCCCTCCTCTAACCGTTTCCGCACCTCCCACCTTCTCAGGGAGAGAGAAGGAACGGGTGAAGGGGAAAAGGAGGATCCGAGTGCCTCACGGAAGGTTCTGAAAGCTGACCGCGAGAAACTCAGAAGGGATCGACTCAACGAACACTTTCAGGAGTTGGGAAACACGTTAGATCCGGATAGACCCAAGAATGACAAGGCAACTATCCTTACTGAAACCGTCCAAATGCTAAAGGACTTAGCTGCTGAAGTTAGTAGGCTTAAAACTGAACATAAAGCACTTTCTGAAGAGTCACACGAACTAATGCAGGAAAAAAATGAACTCAGAGAAGAGAAGACATCTCTTAAATCTGATATAGAAAATCTCAACGCCCAGTATCAGCAGAGAGTGAGAATCATGTTCCCATCATGGAGTGCAATTGACCATTCTGTTGTCATTAATCCACCTTACTCTTATCCACTTCCTATACCTATCCCTCCTGCACCAATTTCGATCCACCCATCTCTTCAACCTTTTCCTTTCTTTGGAAATCAAAACCCTCATCACATTCCTAGTCCTTGTTCAATGTATGTCCCATATTCTACTCCATCTAATGCCCCAGTTGAGCCACCATCTGTGCTGTATGCTTCCACGTCCCATGTGTCGAACCAAAGGGAATCTTTTAGCAAGTCGTCGGGTGATAGAAGGCCTAGTAGTGATGCTGAAAGATGTAGCAAATCTCACGATGTGGCCACAGAACTTGAACTCAAGATGCCTGGATCATCATCAACACAACAGGGTTGCACTTCTGGAGGAAGGAAGGGCAAGCATTCAGTGATAGAAGATAGAACCATCATAGGTGGCAGCGCTGGGAGTGCTTCAAGCCATTATTCTTCGTCTCAAGGACTTCAAGATAGCTCCAACAGTGTGGGTGACATTCCAAAGACTGATAACTGA 1002 0.4651 MDHPNPPHSTTPKHASDSLRRATPSSNRFRTSHLLREREGTGEGEKEDPSASRKVLKADREKLRRDRLNEHFQELGNTLDPDRPKNDKATILTETVQMLKDLAAEVSRLKTEHKALSEESHELMQEKNELREEKTSLKSDIENLNAQYQQRVRIMFPSWSAIDHSVVINPPYSYPLPIPIPPAPISIHPSLQPFPFFGNQNPHHIPSPCSMYVPYSTPSNAPVEPPSVLYASTSHVSNQRESFSKSSGDRRPSSDAERCSKSHDVATELELKMPGSSSTQQGCTSGGRKGKHSVIEDRTIIGGSAGSASSHYSSSQGLQDSSNSVGDIPKTDN* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00208 333 CDD bHLH_AtILR3_like 57 131 - -
Phac3g00208 333 SMART finulus 58 108 IPR011598 GO:0046983
Phac3g00208 333 MobiDBLite consensus disorder prediction 272 287 - -
Phac3g00208 333 MobiDBLite consensus disorder prediction 9 30 - -
Phac3g00208 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 102 IPR011598 GO:0046983
Phac3g00208 333 PANTHER TRANSCRIPTION FACTOR BHLH121 32 331 IPR044579 GO:0003700|GO:0006879
Phac3g00208 333 Gene3D - 50 135 IPR036638 GO:0046983
Phac3g00208 333 MobiDBLite consensus disorder prediction 233 333 - -
Phac3g00208 333 Pfam Helix-loop-helix DNA-binding domain 53 102 IPR011598 GO:0046983
Phac3g00208 333 Coils Coil 92 147 - -
Phac3g00208 333 MobiDBLite consensus disorder prediction 31 62 - -
Phac3g00208 333 MobiDBLite consensus disorder prediction 303 333 - -
Phac3g00208 333 MobiDBLite consensus disorder prediction 244 268 - -
Phac3g00208 333 MobiDBLite consensus disorder prediction 1 62 - -
Phac3g00208 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 123 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00208 Phac-Chr3 1490959 1495630 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00208 41 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.250 3.33e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac3g00208 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00208 - - gmx:100818281 440.269