Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00184 ATGATTGGAGGCCAAGATCTTGTTCCCAATGGCGTGGACACCGAGGGAGAGAACTCAAGGAGCAAGGTGCAGCAGCAGCAGCATCAGCATCGTGATTTTTCTCAGAGCAAAGAACACCCACAGGAGAAAAAGCAGAGTTACCCAGAGAAGAAGAAGGTTGGTGTTGATGAGTTTCAGGCACCAAACTCAGAATTTGGCTCTTCTGGGTTGCAAGAGTTGACCCTCAGCTACCTCTGTGACAACCCAAAATTGAGTCTTGTTGAGAGAGAGGTTGATGGCAGAAGCTTGGTGAAGGGCAAAGGAGTTGTGGTTTATGGGAATTCAGATCAAGATCAAGACGAGTTAAGGTTTAAATCATCTGTGGAAGAGGTGACTGCATTTAGTGCGCGACAATACTTCGACCAGGATTGTCTTCGGAGGAAGGTAGCTGTTGGGAACCAAAAGCAAGATCAAGATGAGAAATGGGTTGAGAGGGATTTCTTGAGTTTGAGTGAGTCAAGGGAGAATTCTTCAAAGAGATCCATTGATGATGAGTGTGAGAGGGAGAAGAGTGGAGGCAGCAAGAAGCAGAAGCTTGAGACTCTTAGTCTCTCTCTTGCTTTGCCTGATGTGTCGCTCTCTCTCACAGCCTCAAACGCTTTGCAAAACGGTGACCAACTTGTTAAGCCAAAGCCTGGTATGCCATCCACAAGGCCCACAACTACGATCAATTCGTGTTCAAATGATTACACTGCAGCTTCTATGTCTCAATCTTACTCTCACCCTTTCTCACACAACCCAAGTTGCTCAATCACCCGAAATTCAACCGACAATTTTGAGTATTCACACAGCAAAGATGATCAAATCTGGCATTGTGGGGAGGGGACTAATGGGTCAGTTCATAGCAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGGCCAATCATTCCTTTATGCAAGGGAACAGTCACTATAAGGCTACTAGCTCAGATAACCAGTCTTTTTTCCCTTCAGAATTGCCTGCAAGAGTGAGATTTGAAGCTCAGTCTGAGGGCTCAAGGGGAAAGAATTCTGAGAATCTGAGAGGCTTGGAAGGTGTGGATGGTGGGAGGATGAAGTTTTCTAGATCAGAGAGAGTTCTGAGAGAAATTGTGTCCGAGTCTATCCCAGCCATGGCTTTGCAATTTCAGGAGTTCACTGATGAAGTCATAACTTCAATCAAGGAATACTTGAAAGGTCTCATTCATATGCCAGAGAAGAAAGGGGAATTGATGAACCTCCAGAATCGGCTTGGCCGAAGATCTGACATCACCAGAGAGACTCTTTCCAAGTGTCATAAAGAGCAGCTAGAGATTTTGACTGCTATCAAGATGGGGCTTGGGAGTTTCTTGTCTGGTAAGTTCCAAATCTTGGAGATGGTGGAGGTTTTCTTGTATATGAGATGTAGAAATGTGAACTGCAAGAGCTCTCTGCCTGTTGAAGACTGTGACTGCAAGATGTGCTCAGGAAATAAGGGGTTTTGCAGCTCTTGCATGTGTCCTGTTTGTATGAGCTTTGACTGTGCAAGTAATACTTGTAGTTGGGTTGGTTGTGATGTTTGTTCCCACTGGTGTCATGCTACCTGTGCCATTCAGAAGAATCTAATCAAACCTGGGCCTATCTTGAAGGGTCCTTCTGGGTCCTCTGAGGTGCAGTTTCATTGTATTGGCTGTGGACATACTTCAGAAATGTATGGCTTTGTTAAAGAGGTCTTTGTGTGTTGTGCCAAGGATTGGGGCCTAGAAACATTGATAAAGGAGCTTGACTGTGTGAGGAGGATTTTCCAGGGAAGTGAAGATCTCAAAGGGAAGGAATTGCATTTTAAGATGGATGATATGCTGTCAAAACTTCAAGCTAAACTGGTTTCTCCTTCGGATGCCTGCAACTTTATCATACAGTTTTTCAGCTACACGGATGGCATGTCAGATTTCCCAGCTTCTGCTATACCCACAAAGGATTTGCCAAAATCTAAGAATAACCTTACAGTAGACACAACAACATCATCTCTTCCACAATCTACTTCTCTGATACCAAAATACACTTATGACATGAGCTTCACTAGGTCAAATGATCTTCAACAGAAGGACCTCAAAACCTCCCTCCTGAGTGAGCAGAAAAAGGAGTCTGATTTGCACCTTGAGGCTTTACTAAGGAAAGGAGGAGGGCTTGAAAGCTTGGAGAGCATCATAAGGATAAAAGAGGCCGAAGCCGGAATGTTCCAGAGCAAGGCAGATGAGGCAAGGAAAGAAGCAGAGGGATTCCAGAAGATGATCAAGACAAATGCTGCACAGATGGTAGAGTATGCAGAAAGGCTTGGCAAGCTTTGCTTGCATGAGGCAGAGGAAAGGAGTAAGAAGAAATTTGAGGAACTCAATGTCTTGCAAAATTCACACTATGATTACTTCAACATGAAAAGCAGAATGCAAGATGAGATTCATGGTTTGTTGAAGAGAATGGAAGCAACAAAGCAGCAATGGGTTTAA 2502 0.4432 MIGGQDLVPNGVDTEGENSRSKVQQQQHQHRDFSQSKEHPQEKKQSYPEKKKVGVDEFQAPNSEFGSSGLQELTLSYLCDNPKLSLVEREVDGRSLVKGKGVVVYGNSDQDQDELRFKSSVEEVTAFSARQYFDQDCLRRKVAVGNQKQDQDEKWVERDFLSLSESRENSSKRSIDDECEREKSGGSKKQKLETLSLSLALPDVSLSLTASNALQNGDQLVKPKPGMPSTRPTTTINSCSNDYTAASMSQSYSHPFSHNPSCSITRNSTDNFEYSHSKDDQIWHCGEGTNGSVHSRFKPIGDGVALANHSFMQGNSHYKATSSDNQSFFPSELPARVRFEAQSEGSRGKNSENLRGLEGVDGGRMKFSRSERVLREIVSESIPAMALQFQEFTDEVITSIKEYLKGLIHMPEKKGELMNLQNRLGRRSDITRETLSKCHKEQLEILTAIKMGLGSFLSGKFQILEMVEVFLYMRCRNVNCKSSLPVEDCDCKMCSGNKGFCSSCMCPVCMSFDCASNTCSWVGCDVCSHWCHATCAIQKNLIKPGPILKGPSGSSEVQFHCIGCGHTSEMYGFVKEVFVCCAKDWGLETLIKELDCVRRIFQGSEDLKGKELHFKMDDMLSKLQAKLVSPSDACNFIIQFFSYTDGMSDFPASAIPTKDLPKSKNNLTVDTTTSSLPQSTSLIPKYTYDMSFTRSNDLQQKDLKTSLLSEQKKESDLHLEALLRKGGGLESLESIIRIKEAEAGMFQSKADEARKEAEGFQKMIKTNAAQMVEYAERLGKLCLHEAEERSKKKFEELNVLQNSHYDYFNMKSRMQDEIHGLLKRMEATKQQWV* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00184 833 Coils Coil 811 831 - -
Phac3g00184 833 Pfam Coiled-coil region of Oberon 695 822 IPR032535 -
Phac3g00184 833 MobiDBLite consensus disorder prediction 24 57 - -
Phac3g00184 833 Coils Coil 783 803 - -
Phac3g00184 833 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 19 832 IPR004082 -
Phac3g00184 833 Pfam PHD - plant homeodomain finger protein 475 599 IPR032881 -
Phac3g00184 833 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 730 750 IPR004082 -
Phac3g00184 833 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 466 487 IPR004082 -
Phac3g00184 833 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 768 790 IPR004082 -
Phac3g00184 833 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 427 442 IPR004082 -
Phac3g00184 833 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 388 410 IPR004082 -
Phac3g00184 833 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 585 604 IPR004082 -
Phac3g00184 833 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 512 532 IPR004082 -
Phac3g00184 833 CDD PHD_OBE1_like 505 564 IPR047578 -
Phac3g00184 833 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00184 Phac-Chr3 1339799 1344154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00184 475 627 PHD Gene Family AT5G57380 22.876 5.64e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00184 - - gmx:100816647 1387.47