Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00102 ATGGAGAAGGTGGCTGCGCCTCCGATTCTCATGCCGCGGAAGCGCGATCTGGCGTACGGCGTCGTCGCGGGGAGTCCCGGCGAGAGCTGGAAGTGGGACTGGGACAGCGTGCGCTTCGCGGGGAAGCCGCCCGCCGATGACGTCGTGTTCGAGGAGGAGAGCGTGGCGGCGGTGGCTCCTCTGCAGCTCAACCTCGCCGGGAGGGTCGGCGGTAACAAGAGAGTGCGCTCGGGGTCGCCCGGGGCGGCGACGTATCCGATGTGTCAGGTGGATAACTGCAGGGAGGATCTGTCGAAGGCGAAGGACTATCACCGGAGGCACAAAGTGTGCGAGGCGCATAGCAAAGCCTCCAAGGCGCTTCTCGCCAACCAAATGCAAAGGTTTTGTCAGCAGTGCAGTAGGTTTCATCCGCTGTCCGAGTTTGACGAGGGGAAGCGGAGCTGCCGCCGGAGACTTGCCGGACACAACCGCCGCCGGAGGAAAACGCAGCCGGAGGATGTTACTTCCGCCACGCCGGCCCCCGCCGCCGCTGCAGCGGCTGCAGCGAATTTGGAAATCTTCAACTTGTTGACTGCAATAGCCGGAGCTTCCCAGGGAAAATTTGAAGAAAGAAGATCACAAGTTCCGGATAGAGAGCAGCTTGTTCAGATTCTCAATAAGATACCTTTGCCTGCGGATCTTGCAACCAAGTTGCTGGATGCTGGTAATGTCAACGGGAAAAAAGATCATGTACAATCGCAGACACCATCCTCTTATCATCATCATGACCAACTGAACCACACCCCGGCAGCCCCATTAACTATGGACTTACTTGCTGTTCTTTCCACCACTCTGTCTGGGTCTGGCCCTGATGCCAATGCGTCCCCCTCTCAAAATAGAAGCTGCAGCAGTGATGGCGGTAGTGTTAAGTCTAGGAGCAGTGCTGATCAGACGAGACAACAGCACTTCTTTTCAGTTGGTGGAGAAAGAAGCAGTAGCAGTTCCCAGTCTCCAGTTGAAGATTCAGACTGCCAGGAGGATGTCAGAGTTAATTTACCGCTGCAACTCTTTAGCTCCTCCCCAGAAGAGGACAGCTTGCCTAAACTAGCATCTTCAAGAAAGTATTTCTCATCTGACAGTAGTAACCCTGCAGAAGAGAGGTCACCATCATCTTCTCCTCCTTCTCCTCCTGTTGTGGAGATGCAGTTTGATTTGCAGGGTGGTGCTAGAGGTCTAAAGCCGGAGAGCATCTCCTCTGGAAGAGGAGTTAATTCAAACAAGGAAACTAGCCAAAGTCATAGTTGTAATATCTCTCTCGATCTATTTAAAGGGTCAAATAACAGGATCCAACAACCCAGTTGGCTTCAAAGCGTTCCATTTCAAGCTGGCTATACATCTTCAGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCACACTGGTAGAATAATGTTTAAACTATTTGACAAGCATCCTAGCCATTTCCCAGCAACATTGCGAACACAGATTTACAGTTGGCTTTCTAATAGGCCATCAGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCCTATCACTTTATGCTTCAATGTCTTCTGCTGCCTGGGAGAAACTAGAGGAAAACTTCCTCCAACATGTTCATTCTTTAATTCAAAACTCAGATTCTGACTTTTGGAGAAATGGAAGGTTTCTAGTACATTCTGGCAGTCAATTAGCTTCACACAAAGATGGGAAGGTGCGCATATGCAAACCGTGGAGAACATGGAAGTCGCCAGAGTTGATATCTGTGTCCCCTCTGGCAATTGTTAGTGGACAGGAAACCTCTATTTCATTGAAGGGTAGAAACCTGTCAACTCCAGGCACAAAGATCCACTGTACGGGTACTGGGTCTTACTCATCAGCAGAAGTCATCAGATCTTCATATCCTGGTGTGATGTATGATAAGATAAAGTTAAGTGGTTTTAAAGTTCAGGATGTTTCACCCGGTGTTGTAGGTCGCTTTTTTATTGAGATTGAAAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCTGATGAGACCATTTGCAAGGAACTGAGATCACTTGAGTCTGAATTTGACGAGGAGGAAAAAATATGTGATGCCATTTCAGAGGAGCATGAACATCAATTTGGAAGGCCAAGATCAAGGGAGGAGGCTTTGCATTTTTTGAATGAGCTTGGCTGGCTGTTTCAAAGAGAAAGATTCTCATATGTGCATGAGGTTCCATCTTATTCTCTTGACAGGTTCAAATTTATACTCACATTTGCTGTGGAAAGAAACTGTTGCATGTTAGTCAAAACCCTTCTCGATGTGCTGGTTGATAAACACATGCAAGGGGAATGGTTGTCAACAGGGCCAGTGGAGATGTTGAATGCAATCCAACTCTTAAATAGAGCAGTGAAAAGAAAGTACATAGGCATGGTTGATTTGCTCATCCACTATTCTATACCGAACAAAAATAGTACATCAAGAAAATATGTATTTCCTCCTAATCTTGAGGGTCCTGCTGGTATCACACCCTTGCACTTGGCAGCATGCACGTCTGGTTCTGAGAGTGTAGTTGACTCTTTAACAAGTGACCCACAGGAGATTGGCTTGATGTGCTGGGACATCCTTGTGGATGCTAATGGGCAGACTCCACATGCCTATGCTATGATGAGGAATAATAACTCTTATAATGCGCTGGTTGCCCGAAAACGTGCTGCTAGACGAAGGCCTGAAATTTCAGTAACAATCGAGAAGGAGATAGCACAATCCTCTCTAAGGGTGGAGCTTCAGCAAGATCAAAGTAACCTATTCAAACGAGGTCAGAGTTCTTGTGCCAAGTGTATGACTGCAGAAATTCGCTACAACAGGAGAATTTCAGGTTCACAGGCTATGCTTCACCGCCCCTTTATTTATTCAATGCTAGCCGTTGCTGCAGTTTGTGTATGTGTTTGTGTTTTCTTCCGTGGACGCCCATATGTAGGCTCAGTTGCTCGCTTCAGTTGGGAAACCCTGGATTATGGCACAATGTAA 3036 0.4773 MEKVAAPPILMPRKRDLAYGVVAGSPGESWKWDWDSVRFAGKPPADDVVFEEESVAAVAPLQLNLAGRVGGNKRVRSGSPGAATYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATPAPAAAAAAAANLEIFNLLTAIAGASQGKFEERRSQVPDREQLVQILNKIPLPADLATKLLDAGNVNGKKDHVQSQTPSSYHHHDQLNHTPAAPLTMDLLAVLSTTLSGSGPDANASPSQNRSCSSDGGSVKSRSSADQTRQQHFFSVGGERSSSSSQSPVEDSDCQEDVRVNLPLQLFSSSPEEDSLPKLASSRKYFSSDSSNPAEERSPSSSPPSPPVVEMQFDLQGGARGLKPESISSGRGVNSNKETSQSHSCNISLDLFKGSNNRIQQPSWLQSVPFQAGYTSSGSDHSPPSLNSDAQDHTGRIMFKLFDKHPSHFPATLRTQIYSWLSNRPSDMESYIRPGCVVLSLYASMSSAAWEKLEENFLQHVHSLIQNSDSDFWRNGRFLVHSGSQLASHKDGKVRICKPWRTWKSPELISVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTGSYSSAEVIRSSYPGVMYDKIKLSGFKVQDVSPGVVGRFFIEIENGFKGNSFPVIIADETICKELRSLESEFDEEEKICDAISEEHEHQFGRPRSREEALHFLNELGWLFQRERFSYVHEVPSYSLDRFKFILTFAVERNCCMLVKTLLDVLVDKHMQGEWLSTGPVEMLNAIQLLNRAVKRKYIGMVDLLIHYSIPNKNSTSRKYVFPPNLEGPAGITPLHLAACTSGSESVVDSLTSDPQEIGLMCWDILVDANGQTPHAYAMMRNNNSYNALVARKRAARRRPEISVTIEKEIAQSSLRVELQQDQSNLFKRGQSSCAKCMTAEIRYNRRISGSQAMLHRPFIYSMLAVAAVCVCVCVFFRGRPYVGSVARFSWETLDYGTM* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00102 1011 MobiDBLite consensus disorder prediction 151 173 - -
Phac3g00102 1011 MobiDBLite consensus disorder prediction 279 424 - -
Phac3g00102 1011 SUPERFAMILY Ankyrin repeat 758 905 IPR036770 -
Phac3g00102 1011 Gene3D - 79 149 IPR036893 GO:0003677|GO:0005634
Phac3g00102 1011 SUPERFAMILY SBT domain 86 166 IPR036893 GO:0003677|GO:0005634
Phac3g00102 1011 MobiDBLite consensus disorder prediction 238 260 - -
Phac3g00102 1011 FunFam Squamosa promoter-binding-like protein 14 79 149 - -
Phac3g00102 1011 MobiDBLite consensus disorder prediction 345 381 - -
Phac3g00102 1011 Pfam SBP domain 88 161 IPR004333 GO:0003677
Phac3g00102 1011 Gene3D - 752 924 IPR036770 -
Phac3g00102 1011 MobiDBLite consensus disorder prediction 279 334 - -
Phac3g00102 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 793 IPR044817 GO:0003677
Phac3g00102 1011 Coils Coil 691 711 - -
Phac3g00102 1011 ProSiteProfiles Zinc finger SBP-type profile. 85 162 IPR004333 GO:0003677
Phac3g00102 1011 MobiDBLite consensus disorder prediction 240 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00102 Phac-Chr3 840303 846452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00102 3 1011 SBP-box Gene Family AT1G20980 52.341 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac3g00102 SBP 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00102 - - gmx:100812180 1662.89