Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00096 ATGGCAGCACCTTTTTCTGCAGCATCTCTCTTTGGAATCAGAGAAGAGGATCAGAATCAGATGAAGCAGCAGCATTCCTCAACCACAACACCATCATCCTCATCAACTCCAGCTGCACCACCACCCCAGAAGAAAAGGAGAAACCAACCTGGAACACCAAATCCAGATGCTGAGGTGATAGCACTATCTCCAAAGACTCTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATCTGCCATGGAAGCTGAAGCAGAAGAGCAATAAAGAGGCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATCAAGAAACACTTCTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAGGCACACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGACGTGACAGTTTCATCACTCACAGAGCCTTTTGTGATGCATTGGCACAAGAAAGTGCAAGAGAGCCACCCAATTTGAGCAGTGCCATTGGCAACCAACTCTATGGGAACAGTAACATGTCCTTAGGCTTATCTCAGATCCCTTCAATCCATGACCAAAACTCTCAATCCAGTGACCTATTGCGTTTTGGTGGTGCACCAAGGACTGGTCAATTTGACCACATTCTCCCACCCAACATGGCCTCACCCTTCAGACCCTCCTCACACCAAACCATGCAAATGCAAAACCCTCCATTCTTCATTCAAGAATCAAACCAAAACCAAAACCAGAACTACCATGATCACCAACAAGGCTTAATCTCAAACAAGCCATTCCAAGGAATGATACAACTATCTGACCTCAACAACACCACCCCTTCTAACCTCTTCAACCTCCCCTTTCTATCCAACCGAAACCACACCCCCAACTACTCCGAGGAACAGCACTTCACCACCACTGAACCCTCAAATTTCTTCACAGAAGGCACCATAATCGAAACAAGCTCCGCCACTGCCCCTTCTCTCTTCAGCACCTCTCTTCAGAGCAGCACCAACATGTCTCACATGTCAGCAACTGCACTGCTCCAAAAAGCTGCTCAAATGGGTGCTGCAAGTTCCAGCAACAACAACAACAGTGCCTCCTCTCTCCTGAGAAGCTTGGCATCCAAATCTGATCACAGGCCACTCATCAGTGCTGCAAACTACAGCAGCATCCTGAACTCCAGCGTGCAGGAGATGATGAACCTTCCCGGGTTCGAAGCATACGATCATGGCATGAACAAGGAGCCAAAACTGAGCGTTGGAGGGTCTGATAGACTCACAAGGGACTTTCTAGGAGTTGCACAGCAACAACAACAACGAGGGTTTAACTTGAGTTCCTTGGAAGCAGAGACAAACAATGCTGCGCCGTCAGGTCAATCTTTCGGAGGTGGAGGGAACTTTCAGTGA 1542 0.4767 MAAPFSAASLFGIREEDQNQMKQQHSSTTTPSSSSTPAAPPPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEAKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAREPPNLSSAIGNQLYGNSNMSLGLSQIPSIHDQNSQSSDLLRFGGAPRTGQFDHILPPNMASPFRPSSHQTMQMQNPPFFIQESNQNQNQNYHDHQQGLISNKPFQGMIQLSDLNNTTPSNLFNLPFLSNRNHTPNYSEEQHFTTTEPSNFFTEGTIIETSSATAPSLFSTSLQSSTNMSHMSATALLQKAAQMGAASSSNNNNSASSLLRSLASKSDHRPLISAANYSSILNSSVQEMMNLPGFEAYDHGMNKEPKLSVGGSDRLTRDFLGVAQQQQQRGFNLSSLEAETNNAAPSGQSFGGGGNFQ* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00096 513 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Phac3g00096 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Phac3g00096 513 MobiDBLite consensus disorder prediction 1 58 - -
Phac3g00096 513 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 490 IPR031140 -
Phac3g00096 513 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Phac3g00096 513 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Phac3g00096 513 SMART c2h2final6 73 95 IPR013087 -
Phac3g00096 513 SMART c2h2final6 114 144 IPR013087 -
Phac3g00096 513 SMART c2h2final6 149 169 IPR013087 -
Phac3g00096 513 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Phac3g00096 513 MobiDBLite consensus disorder prediction 234 277 - -
Phac3g00096 513 FunFam protein indeterminate-domain 12-like 52 120 - -
Phac3g00096 513 Gene3D Classic Zinc Finger 52 122 - -
Phac3g00096 513 Gene3D Classic Zinc Finger 127 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00096 Phac-Chr3 782991 788195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00096 10 480 IDZ Gene Family AT2G02070 49.815 2.39e-135 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac3g00096 zf-C2H2_jaz 3.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00096 K25870 - gmx:100818072 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g00096 3 782991 788195 Phac3g00096 3 782991 788195 ECH