Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00094 ATGAAGCCTGAGTTGTACGAAATCTCCGACGACGAATGGGAGAACCACTCCTTCAAACCCTCGCGCGTCCTCAAGCGACCTCGCACTTCGTCGGCTCCATCTCCTCCACCGATCGAGTCCTTCGCCTACACCTCTAAGGTCGACGTTTTAAGCGAAAACGATAGCGATTGCATCGAAATCGCGCCGAACGACGCCAATTTCCTCGACGACCTCGAGGACGCCGACGTGGACGACGGAGTCGGCGGTTACGCGGCGGCCTCGCGAGGCCGGAGATTCATCATCGACGACGAAGACGAGGACGCGGAAGAGAACGGCGGAAGAGACGGACGCGTGGCGGAGTTGTACGAGGTGGAGTCCAGCGAGGTGGAAGAAGAAGAAGAAGAAGAAGTTGATGAGTTGAACGAAAACGATGTCGTTGGTAGGGCTTTGCATAAGTGCGCGCGAATCTCTGCGGAGTTGAAGGGCGAACTGTTCGGCTCGTCGGGGACCGCGTGCGAGAGGTATTCGGAGGCGGAGTCTTCGTCAGTGAGGATCGTGACTCAGGAGGATGTGGATGTTGCGTGCGCGTCGGAGGATTCGGATTTTCAGCCATTGCTAAAGCCGTATCAGTTGGTTGGTGTCAACTTTTTGCTTCTGTTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGCAAAACAGTTCAGGCCATCACATATTTAACTTTGTTGAATCGCTTGCACAATGATTCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAAAGGTGGTGTCCGCACTTTTCTGTTCTGCAATATCATGGTGCTGGACGTGCAGCATACTGCAAGGAGTTGAACTCTCTGTCCAAGGCTGGATTGCCTCCTCCATTTAATGTTCTTCTCGTGTGTTATTCACTTTTTGAACGTCACAGTGCACAGCAGAAAGATGACCGCAAAATTCTGAAGCGATGGAGATGGAGCTGTGTGTTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCGAACCAACGCTTGATGTTGACTGGGACACCACTTCAAAATGATCTACATGAGTTATGGTCATTGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGACCTAAAAAAGTTACTAAATGCAGAAGATAGAGATTTAATTGGTCGCATGAAGTCCATCTTAGGGCCATTTATTTTGCGGCGACTGAAATCTGATGTGATGCAACAACTTGTTCCAAAAATACAGCAGGTTGAATATGTTATAATGGAAAGGCAGCAGGAATCTGCTTACAAGGATGCCATTGAAGAGTATCGTGCAGTTTCACAAGCTCGGATGGCAAAATGTTCTGAGCTTAATTCAAAAAGTTTACTAGAAGTGCTTCCTCGGCGACAGATAAATAACTATTTCGTTCAGTTCCGCAAGATAGCAAATCACCCCTTGTTAATAAGGCGAATCTACAATGATGAGGATGTCATTCGCTTTGGTAGGAAGCTACATCCAGTAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATAGAAGAACTTAAAAATTACAGTGACTTCTCTATTCATCGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGTATCCTTCCGGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTATCAAAACTTCTTCCTTCACTAAAGAAGGATGGCCATCGAGCCTTGATCTTCAGTCAATGGACCTCAATGCTTGACATATTGGAGTGGTGTTTGGATGTCATTGGATTGACCTATAGGCGGCTTGATGGAAGTACACAGGTAGCGGAGAGGCAAACAATAGTTGATACGTTCAATAACGATACTTCAATATTTGCATGCTTACTTTCCACGAGAGCTGGTGGACAGGGCTTAAACTTAACAGGAGCTGATACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGGCAAGCTGAAGATCGTTGCCATCGAATCGGTCAAACAAAGCCTGTAACCATATATCGGCTAGTGACCAAGGGAACGGTAGATGAAAATGTGTATGAGATTGCAAAAAGAAAGCTAGTATTAGACGCTGCCGTCCTCGAGTCCATGGAGGAGATTAATGAAGGTGCCATGCCCGAGAAGACCATGGGAGAGATATTGTCTGCTATTTTATTAAGTTAA 2247 0.4575 MKPELYEISDDEWENHSFKPSRVLKRPRTSSAPSPPPIESFAYTSKVDVLSENDSDCIEIAPNDANFLDDLEDADVDDGVGGYAAASRGRRFIIDDEDEDAEENGGRDGRVAELYEVESSEVEEEEEEEVDELNENDVVGRALHKCARISAELKGELFGSSGTACERYSEAESSSVRIVTQEDVDVACASEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLNRLHNDSGPHLIVCPASVLENWERELKRWCPHFSVLQYHGAGRAAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMERQQESAYKDAIEEYRAVSQARMAKCSELNSKSLLEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFGRKLHPVGAFGFECTLDRVIEELKNYSDFSIHRLLLHYGVNDRKGILPDKHVMLSAKCRALSKLLPSLKKDGHRALIFSQWTSMLDILEWCLDVIGLTYRRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEINEGAMPEKTMGEILSAILLS* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00094 748 SMART helicmild6 604 687 IPR001650 -
Phac3g00094 748 PANTHER SNF2/RAD54 HELICASE FAMILY 102 725 - -
Phac3g00094 748 Gene3D - 436 745 IPR027417 -
Phac3g00094 748 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 390 IPR014001 -
Phac3g00094 748 Gene3D - 168 413 IPR038718 -
Phac3g00094 748 MobiDBLite consensus disorder prediction 20 40 - -
Phac3g00094 748 Coils Coil 116 136 - -
Phac3g00094 748 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 578 745 IPR001650 -
Phac3g00094 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 425 IPR027417 -
Phac3g00094 748 FunFam Protein CHROMATIN REMODELING 19 isoform A 170 448 - -
Phac3g00094 748 CDD DEXHc_Snf 199 392 - -
Phac3g00094 748 Pfam SNF2-related domain 219 505 IPR000330 GO:0005524|GO:0140658
Phac3g00094 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 729 IPR027417 -
Phac3g00094 748 SMART ultradead3 195 400 IPR014001 -
Phac3g00094 748 Pfam Helicase conserved C-terminal domain 575 687 IPR001650 -
Phac3g00094 748 CDD SF2_C_SNF 565 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00094 Phac-Chr3 749039 757779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00094 220 726 RAD5 or RAD16-like Gene Family AT5G22750 26.966 1.68e-46 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac3g00094 SNF2_N 3.5e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00094 K14439 - gmx:100806323 1315.06