Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00087 ATGTCTTCTCAATGTCAAGGAGTGCATTTTTTGAAGGTTATTGTGGAAAGCATCCTTCAAAGTGGAACAATGAGAGTTTCTACCAGTTTTGTGAGTAGACATTGGCAAGAAATGTCAAATCCAGTCATTCTAAGCCTTCCAAATGGCAGCAAGAGCAAAGTTTTTTGGGTGAATAAAGATGGTGGTGTCTGGTTTTGCAAAGGTTGGAAAGAGTTTGCAAGATACTCCAAGTTGGATGAGTCACATTCTATAGTGTTTCGATATGAAGGAAATTCTTGCTTCAACGTGATTATTTTTGGAGAAAGTGCTTTAGAAATAGAATACCCTTTAAGCAGGGATGCTACTAATGAAGAAGTTGGAGAAATTGATGAAGCTAGTTATTTCTGTGTAAAATTTAGTGAAGAACGAAATGTTTATACTTATTTTGCAAACCCTAAAGATCATGAACTGAGCAGACCATGCCAGCGAAATTTGGCGAATTATATCGACACAAGGAAGGAAATGCTGCTACACTTTTTGTTGAACATGGCAGAACTTGGGAGTGAACCATTCTTATTCAAGGTTACTATATATCCTCTAGAAGAAAACTCAAACACTCCCCTCTTCATAGGTCAAAAAGGAGTTTCTAATATGCCTTCTTCATCCCCTGAAACTCCCTCGACCCCTAAAGCAAGGACACCAAAGCCTAGAGATGATATCTTCGTCTTCATCAAGTCAGAAGTGCCGACAATACCATTTCGATATGCAAAGAGGTATCTTGAGAAAAGTGGAAGACACGTGAGTCTTTGCGTTGGGGATAGATCGTGGCAAGTAAAATTGTTGTTTTTTGATCGAAATTGCCTTGCTAGATTCTCCAATGGGTGGTTTGAATTTGCTGAGGATTGTGATTTGAAAGAGGGAGATCTTTGTGTCCTTAGGATGCTAGATGAGGAAAATATTGTGTTCGATGTTTTCATTGTTTAA 963 0.3842 MSSQCQGVHFLKVIVESILQSGTMRVSTSFVSRHWQEMSNPVILSLPNGSKSKVFWVNKDGGVWFCKGWKEFARYSKLDESHSIVFRYEGNSCFNVIIFGESALEIEYPLSRDATNEEVGEIDEASYFCVKFSEERNVYTYFANPKDHELSRPCQRNLANYIDTRKEMLLHFLLNMAELGSEPFLFKVTIYPLEENSNTPLFIGQKGVSNMPSSSPETPSTPKARTPKPRDDIFVFIKSEVPTIPFRYAKRYLEKSGRHVSLCVGDRSWQVKLLFFDRNCLARFSNGWFEFAEDCDLKEGDLCVLRMLDEENIVFDVFIV* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00087 320 MobiDBLite consensus disorder prediction 205 228 - -
Phac3g00087 320 ProSiteProfiles B3 DNA-binding domain profile. 244 320 IPR003340 GO:0003677
Phac3g00087 320 Gene3D - 211 320 IPR015300 -
Phac3g00087 320 MobiDBLite consensus disorder prediction 205 221 - -
Phac3g00087 320 CDD B3_DNA 243 319 IPR003340 GO:0003677
Phac3g00087 320 Gene3D - 3 103 IPR015300 -
Phac3g00087 320 SUPERFAMILY DNA-binding pseudobarrel domain 243 318 IPR015300 -
Phac3g00087 320 PANTHER B3 DOMAIN-CONTAINING 226 319 - -
Phac3g00087 320 Pfam B3 DNA binding domain 12 99 IPR003340 GO:0003677
Phac3g00087 320 Pfam B3 DNA binding domain 243 316 IPR003340 GO:0003677
Phac3g00087 320 SMART B3_2 233 318 IPR003340 GO:0003677
Phac3g00087 320 SMART B3_2 10 102 IPR003340 GO:0003677
Phac3g00087 320 SUPERFAMILY DNA-binding pseudobarrel domain 4 101 IPR015300 -
Phac3g00087 320 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Phac3g00087 320 CDD B3_DNA 9 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00087 Phac-Chr3 709826 713584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00087 10 135 B3 DNA Binding Superfamily AT1G49475 39.370 6.77e-20 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac3g00087 B3 2.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00087 - - vun:114173592 287.345