Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00045 ATGGGACGTGGAAAGATTGAGATAAAGAGGATCGAGAACACCACCACAAGGCAAGTTACCTTCTCCAAAAGAAGAGGTGGCCTCATCAAGAAGACAAAGGAGCTTTCTGTGCTCTGTGATGCACAGATCGGAATCATCATCTTCTCCAGCACTGGGAAGATGTGGCAATGGTGCACTGAAGCCTTCAGGATGGAGCAGATCATAGAGAGGTATCAGATAACAACAGGAGCTCGCATTGCAGAACGTGATCATCCCCGTGAAGAATTTATCCATGACATGGCGATGCTGAGGCAAGAAACTCTTCGTCTTGAACTGGGAATTCAAAGGTATCTTGGAGAAGACATGGGGTGTTTGCAGTATGAAGATTTGAACAAACTTGAACAAGAATTGGAGAATTCTGTGGCAAAGGTTCGAAATCGTCAGAATGAGCTCTTGCAACAGCAAATGGAGAATCTGAGAAGGAAGGAAAGGATCTTGGAAGAGGAAAACAATAATTTGTCCACTTGGGAACAGAGAGCAGTGTTGGAGTATGAGAAGGCTAGAATGGAAGCAAGCAAAGGAATGCATGTGATGGATGAGTTTCCATTGTTTGAAGACCAAGCTGCTGGTAGCATCCTTCAACTTGCTTCCCCTGTGCTTCCTCACTTTCACCCTTATCTTCAGCTTGCACAACCCAATATCAACCCTCACCAAGATACCAATATATGA 708 0.4463 MGRGKIEIKRIENTTTRQVTFSKRRGGLIKKTKELSVLCDAQIGIIIFSSTGKMWQWCTEAFRMEQIIERYQITTGARIAERDHPREEFIHDMAMLRQETLRLELGIQRYLGEDMGCLQYEDLNKLEQELENSVAKVRNRQNELLQQQMENLRRKERILEEENNNLSTWEQRAVLEYEKARMEASKGMHVMDEFPLFEDQAAGSILQLASPVLPHFHPYLQLAQPNINPHQDTNI* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00045 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Phac3g00045 235 Coils Coil 120 172 - -
Phac3g00045 235 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Phac3g00045 235 Pfam K-box region 85 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac3g00045 235 ProSiteProfiles K-box domain profile. 86 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac3g00045 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac3g00045 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac3g00045 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac3g00045 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac3g00045 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac3g00045 235 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Phac3g00045 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac3g00045 235 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00045 Phac-Chr3 399682 405056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00045 1 227 MADS-box Gene Family AT5G23260 47.755 2.84e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac3g00045 K-box 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00045 - - gmx:100783876 355.14