Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04909 ATGGACCCACCCTCCGACCCTCCTACTCCGGCCACCGTCCCCTTCACCGTCAACAATCACCCGCCGCCGCCCGACCCTAACTCCACTCCCAACCACCCGCCGTACGACGAGATGATATACACAGCTATTGGGGCTCTGAAGGAGAAAGATGGGTCGAGCAAGCGCGCCATAGGAAAGTACATAGAGCAAGTCTACAAGAACCTTCCAACCACTCACTCTGCTCTTCTCACGCACCACCTCAACCGTTTGAGATCAGTTAACCTTCTCGTCATGGTCAAAAAGTCCTATAAGCTCCCTGGATCTGATAATCTTCCACCATCTCCTCCCTCTCAAGTTCACAAGACCCGTGGCAGGCCTCCCAAACCAAAGCCCCAGCCCACCGTCGACCCTGTCTGGGCTTCACTCGGCCTGTCGGATGACCCTGCCCCTGCCTCTGCCTCTGCCTCTGCTCCTGGATCCGAAAAGAGAGGCCCGGGTCGTCCCAGAAAGATCCTGGGTGTGAGCCCGGGCTCGGCAGTGCCGGCCCGGAGGGGCCGCCCACCGGGCTCCGTTGCGAGATCTAAGTTGTCCAAGAGGGCAGGGCGTCCGCCCAAGCCCAAATCCGTCTCGGGGATCTCCAGTGGGCTCAAACGACGAGGCCGCCCGCCTAAAGCCAAATCCAACCTCTCCATAATCCCCTTTGCGGTTCCGGTTGCTCCTGACCAGCCCACGGTGCAGCCCATCGTTCCAGACGCTTCTGTGCCCGATGGGTCTCCCAGGCCCAGAGGACGCCCCAAAAAGATTGTTCCTCCTGGTGGTGCTCCACCGCTCACTCCCACTGCCGACGGTGGTGCAGCCCGTGGCCGCGGACGGCCACGTGGGGTCTTTCCCATAATTAGGGCGGGTCGACTCCAGAAACTCGCCGTTGGAAGGGCTAAGAATCCTGCAAGAAGGCCTGTGGGACGCCCTAAGGGATCCACTGCTGCTGCAATCAGTGCACATAAGGCTGCTAATGAAGATCTAAGGAAGAAGCTTGAACACTTCGTGAGTTGA 1032 0.5959 MDPPSDPPTPATVPFTVNNHPPPPDPNSTPNHPPYDEMIYTAIGALKEKDGSSKRAIGKYIEQVYKNLPTTHSALLTHHLNRLRSVNLLVMVKKSYKLPGSDNLPPSPPSQVHKTRGRPPKPKPQPTVDPVWASLGLSDDPAPASASASAPGSEKRGPGRPRKILGVSPGSAVPARRGRPPGSVARSKLSKRAGRPPKPKSVSGISSGLKRRGRPPKAKSNLSIIPFAVPVAPDQPTVQPIVPDASVPDGSPRPRGRPKKIVPPGGAPPLTPTADGGAARGRGRPRGVFPIIRAGRLQKLAVGRAKNPARRPVGRPKGSTAAAISAHKAANEDLRKKLEHFVS* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04909 343 FunFam Histone H1.2 28 108 - -
Phac2g04909 343 CDD H15 29 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac2g04909 343 SUPERFAMILY "Winged helix" DNA-binding domain 28 106 IPR036390 -
Phac2g04909 343 PRINTS AT-hook-like domain signature 113 123 IPR017956 GO:0003677
Phac2g04909 343 PRINTS AT-hook-like domain signature 250 260 IPR017956 GO:0003677
Phac2g04909 343 PRINTS AT-hook-like domain signature 207 218 IPR017956 GO:0003677
Phac2g04909 343 SMART h15plus2 29 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac2g04909 343 SMART AT_hook_2 279 291 IPR017956 GO:0003677
Phac2g04909 343 SMART AT_hook_2 113 125 IPR017956 GO:0003677
Phac2g04909 343 SMART AT_hook_2 310 322 IPR017956 GO:0003677
Phac2g04909 343 SMART AT_hook_2 190 202 IPR017956 GO:0003677
Phac2g04909 343 SMART AT_hook_2 252 264 IPR017956 GO:0003677
Phac2g04909 343 SMART AT_hook_2 209 221 IPR017956 GO:0003677
Phac2g04909 343 SMART AT_hook_2 174 186 IPR017956 GO:0003677
Phac2g04909 343 SMART AT_hook_2 155 167 IPR017956 GO:0003677
Phac2g04909 343 PANTHER HISTONE H1 9 219 - -
Phac2g04909 343 Pfam linker histone H1 and H5 family 32 93 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac2g04909 343 MobiDBLite consensus disorder prediction 1 31 - -
Phac2g04909 343 MobiDBLite consensus disorder prediction 1 36 - -
Phac2g04909 343 MobiDBLite consensus disorder prediction 97 286 - -
Phac2g04909 343 Gene3D - 27 111 IPR036388 -
Phac2g04909 343 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 31 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac2g04909 343 MobiDBLite consensus disorder prediction 302 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04909 Phac-Chr2 45395898 45399549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04909 6 101 Single Myb Histone (SMH) Gene Family AT1G49950 37.500 9.04e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04909 - - pvu:PHAVU_002G328400g 524.628