Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04871 ATGCCTGTTGTCACAAACACAACAACACCTACAGTGGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTCAGCCATCACCACCACCACCACCCCATTCTAGAAACAGATCCAAACCCTCAAATCCCTTCCATTATCCAATCAGCTAGGGGAAAGTCCACCATATCCTCCTTGCTCCTCTCCACTTTCTCCAACAATACTTCCTCCTCCAGTAATGACACCCCCACCATCAATGGCACCGCCCAAAGCAAGAAAAAAAGCAACTTTTCTGCAGCAACCTTAAGAGGGTTGGGGTGCACCGCCGGCGCGTCGCAGCAGGTGTCGGTGCCGGCGGTGATTCGCTCCTCCGCCGATTGGCAAGGGAAGAAAACAAGAAAGAAGAAGCACAAGAGAGCCACCAGCAGTGGCAAGAACAAGACTTTCCATGGTGGGATTCTAGAAGGTTCCAATCCTGGGTGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAGCAGATACTGCTGCCTCTGTTGATTGTGTTGTGGCCAGAAAGAATGTATCTGCAAGGGGGAAAATTGATGTGGATAAGATCACTCACAGGGAGCGATCATCCTATGCGGGAAGGCGCACAGAAACCTTCACTTTTCTGGACACTGATTCTGACATTTTCACACCACGCTCTGCCTCTGACTCTTATGGCACTGCAACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGTTTTGCTGAGATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACATGATCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTTGGTGAGAGAATTGGTCACGTGAACACCGGACTTAAGGAAGATGAGATGGGACGGAACATAAGGAAGGCCAGACTTCAATTTTGGGATGATACATCAAAGCATCAAATAGATAAAGAGTGCAGCATTTGCCAGGAGGAGTATGAAGCTGGTGATGAGCTGGGGAGGCTAAATTGTGAACACAGTTATCACTTTCAGTGTATAAAACAATGGCTTTCACAGAAAAATTTCTGCCCAGTATGTAAGCAGCAAGTTGCAGCACGACACTGA 1131 0.4677 MPVVTNTTTPTVAEHIKWRRPRNQFSHHHHHHPILETDPNPQIPSIIQSARGKSTISSLLLSTFSNNTSSSSNDTPTINGTAQSKKKSNFSAATLRGLGCTAGASQQVSVPAVIRSSADWQGKKTRKKKHKRATSSGKNKTFHGGILEGSNPGCVDFQDVWCGPGIGFSADTAASVDCVVARKNVSARGKIDVDKITHRERSSYAGRRTETFTFLDTDSDIFTPRSASDSYGTATYYRHVRDPSSDGFAEIMMLQGSLLMGGQLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKARLQFWDDTSKHQIDKECSICQEEYEAGDELGRLNCEHSYHFQCIKQWLSQKNFCPVCKQQVAARH* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04871 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 23 372 IPR045191 GO:0061630
Phac2g04871 376 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Phac2g04871 376 MobiDBLite consensus disorder prediction 65 86 - -
Phac2g04871 376 MobiDBLite consensus disorder prediction 122 137 - -
Phac2g04871 376 MobiDBLite consensus disorder prediction 118 144 - -
Phac2g04871 376 SUPERFAMILY RING/U-box 327 373 - -
Phac2g04871 376 Pfam Ring finger domain 326 369 IPR001841 -
Phac2g04871 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 375 IPR013083 -
Phac2g04871 376 FunFam E3 ubiquitin-protein ligase rnf12-A 295 374 - -
Phac2g04871 376 SMART ring_2 328 368 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04871 Phac-Chr2 45176539 45180529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04871 12 283 C3H Transcription Factor Family AT1G73760 39.932 1.93e-54 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04871 - - vum:124831997 696.812