Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04870 ATGGGGAAGAAGAAGAAGAGGGTTTCCTCCAAGGTGTGGTGTTACTACTGCGATCGTGAATTCGACGACGAGAAGATCTTGGTGCAGCATCAGAAAGCCAAGCACTTCAAGTGCCACGTCTGCCACAAGAAGCTCTCAACCGCCAGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAATCCGTCACCAAGGTGCCCAATGCAAAACCTGGCAGAGAGAGTACGGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATATCTTGGCTGCACATTATGGTGAAGAAGAGGATGATGTTCCATCAAAGGCAGCCAAGGTTGATATTCCACAAGGTCAGCTTGTAGGTGGAATGAGGCCACCTCCTTTGGGTACAGGATATCCTCCGCGATCAGTCTTGCCTACACTTCCACCCGTTTATAATCCAGCTGTACCCTTGCCACCGAATGCTTGGGTGGTTCCACCTCGACCGCAGCCATGGTTTTCACAACCTCCAGCTGTTTCAGTTCCTCCTCCTGCCCCATTCACACAGCAGCCATTATTTCCTTTGCAGAATGTCAGGCCTCCACTGCCAGCAACTGCTCCGGCAGCACTGCAAACACAGATTGCTCCTCCTGGATTGCTTACATCTGCACCGGTCCCAGTTTCACAACCTTTATTCCCTGTTGTTGGAAACAACCATACAACGACCCAAAGTTCATATTCTGCTCCACCTCTGCCCTCAAGTGTTCCATCAGTTACTCCAGTGATGTCTGCCAATGTCCCTGTTGATACACATTTGAGTACCCACTCTTCAGTAACAAACAGTTACCAGGCTATAGGAGTTCCAGCAAGTAATTCACACTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTTCTCAACCTGCCACCAACGAAGTCTACTTAGTTTGGGATGACGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGGTAAGTCATACTACCTCTGTAATAGATGGAGTTGCTTTCGCATCTAACCAGATGAGTAGGCTTTATGCTTCCTGTTTTCAGATTCAGTTGTTTACACATTGTTTCCTATTTAAAAAGGTACATTCTGAATAA 1167 0.4764 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTASGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEDDVPSKAAKVDIPQGQLVGGMRPPPLGTGYPPRSVLPTLPPVYNPAVPLPPNAWVVPPRPQPWFSQPPAVSVPPPAPFTQQPLFPLQNVRPPLPATAPAALQTQIAPPGLLTSAPVPVSQPLFPVVGNNHTTTQSSYSAPPLPSSVPSVTPVMSANVPVDTHLSTHSSVTNSYQAIGVPASNSHSYASGPNTGGPSIGPPPVIANKAPASQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQVSHTTSVIDGVAFASNQMSRLYASCFQIQLFTHCFLFKKVHSE* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04870 388 PANTHER ZINC FINGER PROTEIN 207 1 351 - -
Phac2g04870 388 SMART c2h2final6 12 35 IPR013087 -
Phac2g04870 388 SMART c2h2final6 36 59 IPR013087 -
Phac2g04870 388 Gene3D Classic Zinc Finger 1 66 - -
Phac2g04870 388 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Phac2g04870 388 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Phac2g04870 388 CDD SUF4-like 13 92 - -
Phac2g04870 388 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Phac2g04870 388 MobiDBLite consensus disorder prediction 283 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04870 Phac-Chr2 45168426 45172248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04870 1 367 C2H2 Transcription Factor Family AT1G30970 60.567 9.84e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac2g04870 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04870 - - gsj:114413692 685.256