Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04832 ATGGCGGAAAATTCTTCTCCTGCAATCGACACTCACCACAGACTTCCATTCTCATCAATGCTTAATGTTCTTGTCATTGACACTAACCTCAGTGTTCTTGAATACATCAAGCAAGCATGCACCCACTCTTCCTATCAAGTTATACCATGCTCTGAATCTCTGACTGCTGCCAATTTTTTGCGGGAAAGAAAGGAGCTCATTCATCTCATACTCATTGAGGCTCACATGCCATTGATGGATGGCTATGAATTCCTGCAATTCGTCAAAGAAGAACAAATCAATGTTCCTCTCATCATGATGTCCACCGATGATAGTAAGACTTCCATATTGAAGGCCCTTGAAGTTGGAGCTTGTGATTATTGGATCAAACCCTTGGAAAAGAATCGGATCGTGAGTATGTGGATACATGTTGTGAAGAACAGCATGAGTAAAGATAAGAAGCGAAAAGATATTGGTAGCCAGAAAGATGATGACAGAACAAGAGTGATAAGTGATAATTCTGAATTTGCTTCATCTGTAGTTGATTTTGATGTTGATGAATCAAATAATGCTAATCCACCCTCAAGAAAAAAGAAGCGCGTAGTATGGTCAACAGAACTGCATGATTTGTTTCTCAATGCCATGAAGAAATGTGGAGGGGAAGATGCCGTGCCCAAGAAAATTCTTGAAGCTATGAACGTTCCAGGTTTGGAAAGAGGACACGTTGCAAGTCATCTGCAGAAACACAGAAAATATTTGAGAAAGAAGCAACAGAAGGAGATGTGGTTGGCTTCAGGGAATACAGAACCTGAAAGAATCCACTTGCAATCTTCTACTTCACTCACAGATTTTCATCATCCTGGTTTCACAGACAACATGGGACCAAAAGGAGAGCAACATTTTGATGCAGAAGAAGCTTTGGCACATCATCATCATCCTCTTTTAGCAACTTTTTCTAACATGGCCATTGCTAAGAATTCTCCACAGTTCATGAGAAAAATTATGCAGCATTATCATCATCAAATTCATCCAATCAACTTTCACTCAACATCCAACACAATTTCTGGAAATACAGCTTTTGCTCCCCAGAATTACAACTCTGGCATCAACATGGATAATGGGTTAGCATCACCAGAATCAATCCAAGGTGGAAACAACATGGGTGAAGTGATTCTGAATCAAAACGCAGGTTTGTCAAGTTGTGCTGTGAGATCTTCTGATGCAATAGATACTGATGATGTAACAAGTGAGGAGCAGCTAATTCTATCAACAATGGATGAAACCATCACAAGGCCTGCGTCTTAA 1284 0.4011 MAENSSPAIDTHHRLPFSSMLNVLVIDTNLSVLEYIKQACTHSSYQVIPCSESLTAANFLRERKELIHLILIEAHMPLMDGYEFLQFVKEEQINVPLIMMSTDDSKTSILKALEVGACDYWIKPLEKNRIVSMWIHVVKNSMSKDKKRKDIGSQKDDDRTRVISDNSEFASSVVDFDVDESNNANPPSRKKKRVVWSTELHDLFLNAMKKCGGEDAVPKKILEAMNVPGLERGHVASHLQKHRKYLRKKQQKEMWLASGNTEPERIHLQSSTSLTDFHHPGFTDNMGPKGEQHFDAEEALAHHHHPLLATFSNMAIAKNSPQFMRKIMQHYHHQIHPINFHSTSNTISGNTAFAPQNYNSGINMDNGLASPESIQGGNNMGEVILNQNAGLSSCAVRSSDAIDTDDVTSEEQLILSTMDETITRPAS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04832 427 Gene3D - 19 158 - -
Phac2g04832 427 Gene3D - 188 249 - -
Phac2g04832 427 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 299 IPR045279 GO:0009736
Phac2g04832 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 247 IPR017930 -
Phac2g04832 427 ProSiteProfiles Response regulatory domain profile. 22 138 IPR001789 GO:0000160
Phac2g04832 427 Pfam Response regulator receiver domain 23 132 IPR001789 GO:0000160
Phac2g04832 427 SMART REC_2 21 134 IPR001789 GO:0000160
Phac2g04832 427 SUPERFAMILY CheY-like 19 146 IPR011006 -
Phac2g04832 427 FunFam Two-component response regulator 187 250 - -
Phac2g04832 427 NCBIfam myb-like DNA-binding domain, SHAQKYF class 191 244 IPR006447 GO:0003677
Phac2g04832 427 SUPERFAMILY Homeodomain-like 189 248 IPR009057 -
Phac2g04832 427 CDD REC_typeB_ARR-like 23 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04832 Phac-Chr2 44899067 44900697 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04832 56 248 Response Regulator Gene Family AT3G16857 39.286 3.41e-38 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phac2g04832 Response_reg 2.2e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04832 - - pvu:PHAVU_002G322000g 673.315