Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04688 ATGACCACCGTAGCGGTCACCACTCGATCTCAGATCCTCCGCCACACCGCTGCATTTACCTCATCAGTCCTCTCGCAACCCGAACTCCGGCGCCGCCTCATCGCCACTCTTCTCCGCGACACTCCAATCTCCGACGAGAAACACCTCAAACTCGCCGCAGACACTCTAGAAAGCGCGATTTCCTTCGCCAGCCCCGCCCTTCGGACCTCCTCCCTCTCTCTCCTGGAGAAGCTCCTCTTCCCTCTCCCCGACTTCGCCCTCTCCTCGCTACTCCTCTCTCTCGCCCACGCCATCCGTAACCGCCCAACCGAATCCGCCACCAGCCTCCTCCAAATTTTTCACTCCAACAAAAACAACAACGCTTCCCTCGCTAGATCGGAAATCGCTCCTGCGCTCTACGAGCGCCTCTTCTCTCCACATCTCTTCCCTGTCTTCCGCTGGTTCGATGAGCAGAGAACGAAGATTCTCTCCTCCAGTCCCTCAACCTCGAGCCGTGAAAACGATTATTCGGTCTCTGAAGAGTACTCGGTGGTGCTGCCTTGCGCCAAGGTGCTATCGAAGATGAGCGAGGAGCAGGCCGGAAAGCTCCGGGAGGTGGAGAGAGAGTACGAAGAAGTTCTCGACGAGAACTGTAGGGTTCTCGCAGAGTATTTCAAAGAGGTTTTGGTGAAAGAGAACAGTGACGCGGGAATTAGTCCACCGTCGTTGATACTGAAGAGCGCCGCTGAAGGTGGCGGCAGGGAGAACCGAACGGAGGAGATGACGCAAATGAGTGTGTTGGAGAACGGACGGTATAATCCAATATGGTCCGAAAGGGAAGCATCTGTTGATTTTTTGAGCCCCGGTTCCAGCAGAAGATCTCCCCAGACACCATTTTATCCTCAAAGAGTCTTTTCCAGAATTCTCAATCCCAAAAATCCTTCAAAAAATTGGACAACGCCAGTCCATTTAAACACTACCCCTGACGCTGATTTTTCTTCAGAAGAGAGTTTGCTCAGTTCTTCTTCAGATTCTGAGGCAGAAAATGAGGAAAAGGACACAACTATCGCATTGTTGGAGCCTCGACAAAGCCAAATTCAAGAACAAATGCAAACCTTCTTCAAACAATCTAGGGATTCACCAGATTATCCTATGGCAGACTTCGATAACCCGCTGAATGGAGTTGGGAAACATGCACCTCCCAAGGATTTTGTATGTCCAATCACAAGTCATATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACCTATGAACGTAAAGCGATCGAGGAATGGTTCAACAGAGGGAACTTAACCTGTCCCATCACTCGCCAGAAGCTGCAAAACACTCAGCTGCCCAAAACAAATTATGTGCTCAAACGATTAATTGCGAGCTGGAAAGATCGCAACCCCCATTTGGTCCAACCGCCGTATGAGAGTCCATACGAAGATGCCGAGGCAGCTGTGCAGTCAACAACGCCTTCAACTTCTCCTAATAGTGTTATAATCCAAGCCACAGTTGATGGGATGATGAGTGAGTTACGCTGTGCCATCAATAATCTGTACATGTCAGAGATTCTCAAGGAATCGGAAACGGCCGTGCTTCAAATTGAGAAGTTCTGGAGAGGAGTGAATCTGGGAGTGGATATCCATAGAATGTTAGCAAAACCTGCGATTATCAATGGATTTATGGAGATTCTTTTCAATTCGGTGGAGGCCCAGGTGCTACAAGCGGCAGTTTTCCTTCTAGCCGAGATGGGGTCTAGGGACAACTCTGTTATCGAGACTCTCACCCGTGTGAAGACTGATGTGGAATGTATCATTGCTCTTTTCAAGAACGGGTTGACAGAGGCTGTTGTGTTGTTGCACCTACTGAACCCTCCCATTACGAGTCTTACGGAGATGGCCATAGTGGAGTCTCTCATAACGGTTTTGAATACGAAAGAGGAAGAATTGGTTGCGATGTGTTTGAAGCCAAAAACTGCTGCAATGCTTTTACTTGCAAGGATAACTGGAAGCAGTGAAGAGATAATTGCATCTTCTGTTGTCAATACCCTTTTCTCTGGAAATGTAATTGGAACTATTGTCAGCAGTTTAGGAGCTGACTTGGCAAAGGAGAGGATTGCTGCAGTAGAGATCTTATTGAGATGCATGGAAGAAGATGGGACTTGCAGGAGTAACATTGCTGATAAAGCAGAGTTGTCACCTCTTATGGAAACTTTAATCGGTGCTGATGATGGAGAGCGTTTTAAGATTATTCAGTTTTTTGCTGAGTTGGTCAAATTAAATAGGAGGACATTCACTGAACAAATTCTCCATATTATAAAGGAACAAGGACCTTTTAGTACAATGCATACTCTCCTTATTTATTTGCAGGCAGCACTTCACGATCATTGTCCAGTTATGGCTGGCCTCTTACTCCAACTAGATCTTCTGGTTGAGCCAAGAAAAATGAGCATATACCGCGAAGAGGCTATGGATACTCTTATTTCATGTCTGAGAAACACAGATTTCCCCGTTACCCAATTAGCAGCTGCAGATACAATCATGTCACTGCAAGGGAGCTTCGACTTCTCTGGAAACCCTCTAATTAGAGAAGTCCTCCTTAAACGTGCAGGTATTGACAAAAGTTCCAGAAGTCTTGTATTGGTGGATCATCAGATTAGCAACTCCAGTCCAGAAATTGATATAACTCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAAAGAAGAATTGCATATATTCTAGTTAGCCATGAATTTGGCACTATTTTTGAGGCTTTAGCTGATGGCATGAAGAGCCGAAATCCAGAACTACGATCAGCATGCTTTTTATCAGCTACCTGGCTCACGTACATGTTGACCATTCTACCGGATACAGGCATACAAGTACCAGCTCGTGCTTGCTTGCTGAAGCAGTTCATAGCTAAATTAAATTCTGCTAGGGATGTAGAAGACAGAATCCTTTCTATGGTTGCTCTCAATAGCTTTCTTCATTTCCCTGAAGGCTTAGGTGATCTAACTTCCTACACTAAGGATATCTTAAAAGGGTTGAGAGAGCTCAAGAGATCCTGTCCCTTAGCATCTAAAATGCTAAAATCTCTGGTTGAAGAAAATGAATCTAAATCGGACATTTGGATACATAAAGAGCTCATAAAACAAGACTGCAGCGAAAATGGAGAGGTGTTGTCTGTCATATGCTTTAAGGATAAAAAAATTTCGGGTCATACAGATGGCACAATTAAGGTCTGGACATTAAAGAATAATTTATTCCATCTGTTGCAAGAAATCCAAGAACATACTAAAGCAGTGACAGACTTGGTGATTTCAGAATCTGGTGACAGACTGTACAGTGGTTCACTTGACCGAACTTCAAAGGTCTGGTCTATTGGAAAGGCAGCAATACATTGTGTACAGGTGTATGATATGAAGGACCAGATTCATAATTTAGTTGTAACCGATAGCTTAACTTGTTTCGTTTCGCAGGGGACTGGTGTCAAGGTTCAGTCACTGAATGGAGAGTCAAAGCTGTTAAATTCTAGCAAATATGTGAAGTGTTTGGCTCATGTTAATGGGAAATTATATTGTGGATGCCGTGACAGCAGTGTTCAGGAGATACATTTGGCCACTGGAACAGTCAATACTATTCAAAGTGGTTATAAAAGATTACTTGCGAAAGCAAATCCTATTCATGCACTACAAATTCATGGTGAACTTATATACGCAGCTGGTTCTTTCTTGGATGGTTCTTCTTTAAAGATATGGAACAGTTCCGATTACAGTATGGTTGGATCACTGCAAACTGGATCTGAAGTGCGGGCTATGGCAGTGAGCTCAGGATTGATTTATTTGGGGTGCAAAGGAGGTACTGTGGAAATTTGGGATATGAAAAAACGCTGTAAAGTTGACACGTTGCAAATGGGTACCAATTGTAGGGTCAATTGCATGGCTCTAGACAGCAATGAAGAATTTTTGGTAATTGGAACTTCAGATGGACAAATTCAGGCTTGGGAAATGAATTAA 4005 0.4467 MTTVAVTTRSQILRHTAAFTSSVLSQPELRRRLIATLLRDTPISDEKHLKLAADTLESAISFASPALRTSSLSLLEKLLFPLPDFALSSLLLSLAHAIRNRPTESATSLLQIFHSNKNNNASLARSEIAPALYERLFSPHLFPVFRWFDEQRTKILSSSPSTSSRENDYSVSEEYSVVLPCAKVLSKMSEEQAGKLREVEREYEEVLDENCRVLAEYFKEVLVKENSDAGISPPSLILKSAAEGGGRENRTEEMTQMSVLENGRYNPIWSEREASVDFLSPGSSRRSPQTPFYPQRVFSRILNPKNPSKNWTTPVHLNTTPDADFSSEESLLSSSSDSEAENEEKDTTIALLEPRQSQIQEQMQTFFKQSRDSPDYPMADFDNPLNGVGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVQPPYESPYEDAEAAVQSTTPSTSPNSVIIQATVDGMMSELRCAINNLYMSEILKESETAVLQIEKFWRGVNLGVDIHRMLAKPAIINGFMEILFNSVEAQVLQAAVFLLAEMGSRDNSVIETLTRVKTDVECIIALFKNGLTEAVVLLHLLNPPITSLTEMAIVESLITVLNTKEEELVAMCLKPKTAAMLLLARITGSSEEIIASSVVNTLFSGNVIGTIVSSLGADLAKERIAAVEILLRCMEEDGTCRSNIADKAELSPLMETLIGADDGERFKIIQFFAELVKLNRRTFTEQILHIIKEQGPFSTMHTLLIYLQAALHDHCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNTDFPVTQLAAADTIMSLQGSFDFSGNPLIREVLLKRAGIDKSSRSLVLVDHQISNSSPEIDITPEEEKAADDWERRIAYILVSHEFGTIFEALADGMKSRNPELRSACFLSATWLTYMLTILPDTGIQVPARACLLKQFIAKLNSARDVEDRILSMVALNSFLHFPEGLGDLTSYTKDILKGLRELKRSCPLASKMLKSLVEENESKSDIWIHKELIKQDCSENGEVLSVICFKDKKISGHTDGTIKVWTLKNNLFHLLQEIQEHTKAVTDLVISESGDRLYSGSLDRTSKVWSIGKAAIHCVQVYDMKDQIHNLVVTDSLTCFVSQGTGVKVQSLNGESKLLNSSKYVKCLAHVNGKLYCGCRDSSVQEIHLATGTVNTIQSGYKRLLAKANPIHALQIHGELIYAAGSFLDGSSLKIWNSSDYSMVGSLQTGSEVRAMAVSSGLIYLGCKGGTVEIWDMKKRCKVDTLQMGTNCRVNCMALDSNEEFLVIGTSDGQIQAWEMN* 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04688 1334 ProSiteProfiles Trp-Asp (WD) repeats profile. 1300 1334 IPR001680 GO:0005515
Phac2g04688 1334 Gene3D - 538 1030 IPR011989 -
Phac2g04688 1334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1300 1334 - -
Phac2g04688 1334 SUPERFAMILY WD40 repeat-like 1067 1333 IPR036322 GO:0005515
Phac2g04688 1334 SUPERFAMILY RING/U-box 392 468 - -
Phac2g04688 1334 ProSitePatterns Trp-Asp (WD) repeats signature. 1319 1333 IPR019775 -
Phac2g04688 1334 ProSiteProfiles U-box domain profile. 392 467 IPR003613 GO:0004842|GO:0016567
Phac2g04688 1334 SMART Ubox_2 396 460 IPR003613 GO:0004842|GO:0016567
Phac2g04688 1334 Pfam WD domain, G-beta repeat 1088 1123 IPR001680 GO:0005515
Phac2g04688 1334 MobiDBLite consensus disorder prediction 304 337 - -
Phac2g04688 1334 CDD RING-Ubox_PUB 394 446 IPR045210 -
Phac2g04688 1334 ProSiteProfiles Trp-Asp (WD) repeats profile. 1091 1124 IPR001680 GO:0005515
Phac2g04688 1334 SMART WD40_4 1084 1123 IPR001680 GO:0005515
Phac2g04688 1334 SMART WD40_4 1042 1079 IPR001680 GO:0005515
Phac2g04688 1334 SMART WD40_4 1253 1289 IPR001680 GO:0005515
Phac2g04688 1334 SMART WD40_4 1158 1201 IPR001680 GO:0005515
Phac2g04688 1334 SMART WD40_4 1292 1332 IPR001680 GO:0005515
Phac2g04688 1334 SMART WD40_4 1211 1250 IPR001680 GO:0005515
Phac2g04688 1334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1091 1124 - -
Phac2g04688 1334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 469 IPR013083 -
Phac2g04688 1334 Gene3D - 1031 1127 IPR015943 GO:0005515
Phac2g04688 1334 SUPERFAMILY ARM repeat 33 1014 IPR016024 -
Phac2g04688 1334 Coils Coil 695 715 - -
Phac2g04688 1334 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 1333 - -
Phac2g04688 1334 Coils Coil 189 209 - -
Phac2g04688 1334 Gene3D - 1128 1334 IPR015943 GO:0005515
Phac2g04688 1334 MobiDBLite consensus disorder prediction 304 346 - -
Phac2g04688 1334 Pfam U-box domain 394 464 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04688 Phac-Chr2 43992226 44001012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04688 394 471 U-box Gene Family AT1G71020 47.436 5.23e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04688 - - vun:114176884 2317.73