Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04687 ATGACCACCGTAGCGGTCACCACTCGATCTCAGATCCTCCGCCACACCGCTGCATTTACCTCATCAGTCCTCTCGCAACCCGAACTCCGGCGCCGCCTCATCGCCACTCTTCTCCGCGACACTCCAATCTCCGACGAGAAACACCTCAAACTCGCCGCAGACACTCTAGAAAGCGCGATTTCCTTCGCCAGCCCCGCCCTTCGGACCTCCTCCCTCTCTCTCCTGGAGAAGCTCCTCTTCCCTCTCCCCGACTTCGCCCTCTCCTCGCTACTCCTCTCTCTCGCCCACGCCATCCGTAACCGCCCAACCGAATCCGCCACCAGCCTCCTCCAAATTTTTCACTCCAACAAAAACAACAACGCTTCCCTCGCTAGATCGGAAATCGCTCCTGCGCTCTACGAGCGCCTCTTCTCTCCACATCTCTTCCCTGTCTTCCGCTGGTTCGATGAGCAGAGAACGAAGATTCTCTCCTCCAGTCCCTCAACCTCGAGCCGTGAAAACGATTATTCGGTCTCTGAAGAGTACTCGGTGGTGCTGCCTTGCGCCAAGGTGCTATCGAAGATGAGCGAGGAGCAGGCCGGAAAGCTCCGGGAGGTGGAGAGAGAGTACGAAGAAGTTCTCGACGAGAACTGTAGGGTTCTCGCAGAGTATTTCAAAGAGGTTTTGGTGAAAGAGAACAGTGACGCGGGAATTAGTCCACCGTCGTTGATACTGAAGAGCGCCGCTGAAGGTGGCGGCAGGGAGAACCGAACGGAGGAGATGACGCAAATGAGTGTGTTGGAGAACGGACGGTATAATCCAATATGGTCCGAAAGGGAAGCATCTGTTGATTTTTTGAGCCCCGGTTCCAGCAGAAGATCTCCCCAGACACCATTTTATCCTCAAAGAGTCTTTTCCAGAATTCTCAATCCCAAAAATCCTTCAAAAAATTGGACAACGCCAGTCCATTTAAACACTACCCCTGACGCTGATTTTTCTTCAGAAGAGAGTTTGCTCAGTTCTTCTTCAGATTCTGAGGCAGAAAATGAGGAAAAGGACACAACTATCGCATTGTTGGAGCCTCGACAAAGCCAAATTCAAGAACAAATGCAAACCTTCTTCAAACAATCTAGGGATTCACCAGATTATCCTATGGCAGACTTCGATAACCCGCTGAATGGAGTTGGGAAACATGCACCTCCCAAGGATTTTGTATGTCCAATCACAAGTCATATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACCTATGAACGTAAAGCGATCGAGGAATGGTTCAACAGAGGGAACTTAACCTGTCCCATCACTCGCCAGAAGCTGCAAAACACTCAGCTGCCCAAAACAAATTATGTGCTCAAACGATTAATTGCGAGCTGGAAAGATCGCAACCCCCATTTGGTCCAACCGCCGTATGAGAGTCCATACGAAGATGCCGAGGCAGCTGTGCAGTCAACAACGCCTTCAACTTCTCCTAATAGTGTTATAATCCAAGCCACAGTTGATGGGATGATGAGTGAGTTACGCTGTGCCATCAATAATCTGTACATGTCAGAGATTCTCAAGGAATCGGAAACGGCCGTGCTTCAAATTGAGAAGTTCTGGAGAGGAGTGAATCTGGGAGTGGATATCCATAGAATGTTAGCAAAACCTGCGATTATCAATGGATTTATGGAGATTCTTTTCAATTCGGTGGAGGCCCAGGTGCTACAAGCGGCAGTTTTCCTTCTAGCCGAGATGGGGTCTAGGGACAACTCTGTTATCGAGACTCTCACCCGTGTGAAGACTGATGTGGAATGTATCATTGCTCTTTTCAAGAACGGGTTGACAGAGGCTGTTGTGTTGTTGCACCTACTGAACCCTCCCATTACGAGTCTTACGGAGATGGCCATAGTGGAGTCTCTCATAACGGTTTTGAATACGAAAGAGGAAGAATTGGTTGCGATGTGTTTGAAGCCAAAAACTGCTGCAATGCTTTTACTTGCAAGGATAACTGGAAGCAGTGAAGAGATAATTGCATCTTCTGTTGTCAATACCCTTTTCTCTGGAAATGTAATTGGAACTATTGTCAGCAGTTTAGGAGCTGACTTGGCAAAGGAGAGGATTGCTGCAGTAGAGATCTTATTGAGATGCATGGAAGAAGATGGGACTTGCAGGAGTAACATTGCTGATAAAGCAGAGTTGTCACCTCTTATGGAAACTTTAATCGGTGCTGATGATGGAGAGCGTTTTAAGATTATTCAGTTTTTTGCTGAGTTGGTCAAATTAAATAGGAGGACATTCACTGAACAAATTCTCCATATTATAAAGGAACAAGGACCTTTTAGTACAATGCATACTCTCCTTATTTATTTGCAGGCAGCACTTCACGATCATTGTCCAGTTATGGCTGGCCTCTTACTCCAACTAGATCTTCTGGTTGAGCCAAGAAAAATGAGCATATACCGCGAAGAGGCTATGGATACTCTTATTTCATGTCTGAGAAACACAGATTTCCCCGTTACCCAATTAGCAGCTGCAGATACAATCATGTCACTGCAAGGGAGCTTCGACTTCTCTGGAAACCCTCTAATTAGAGAAGTCCTCCTTAAACGTGCAGGTATTGACAAAAGTTCCAGAAGTCTTGTATTGGTGGATCATCAGATTAGCAACTCCAGTCCAGAAATTGATATAACTCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAAAGAAGAATTGCATATATTCTAGTTAGCCATGAATTTGGCACTATTTTTGAGGCTTTAGCTGATGGCATGAAGAGCCGAAATCCAGAACTACGATCAGCATGCTTTTTATCAGCTACCTGGCTCACGTACATGTTGACCATTCTACCGGATACAGGCATACAAGTACCAGCTCGTGCTTGCTTGCTGAAGCAGTTCATAGCTAAATTAAATTCTGCTAGGGATGTAGAAGACAGAATCCTTTCTATGGTTGCTCTCAATAGCTTTCTTCATTTCCCTGAAGGCTTAGGTGATCTAACTTCCTACACTAAGGATATCTTAAAAGGGTTGAGAGAGCTCAAGAGATCCTGTCCCTTAGCATCTAAAATGCTAAAATCTCTGGTTGAAGAAAATGAATCTAAATCGGACATTTGGATACATAAAGAGCTCATAAAACAAGACTGCAGCGAAAATGGAGAGGTGTTGTCTGTCATATGCTTTAAGGATAAAAAAATTTCGGGTCATACAGATGGCACAATTAAGGTCTGGACATTAAAGAATAATTTATTCCATCTGTTGCAAGAAATCCAAGAACATACTAAAGCAGTGACAGACTTGGTGATTTCAGAATCTGGTGACAGACTGTACAGTGGTTCACTTGACCGAACTTCAAAGGTCTGGTCTATTGGAAAGGCAGCAATACATTGTGTACAGGTGTATGATATGAAGGACCAGATTCATAATTTAGTTGTAACCGATAGCTTAACTTGTTTCGTTTCGCAGGGGACTGGTGTCAAGGTTCAGTCACTGAATGGAGAGTCAAAGCTGTTAAATTCTAGCAAATATGTGAAGTGTTTGGCTCATGTTAATGGGAAATTATATTGTGGATGCCGTGACAGCAGTGTTCAGGAGATACATTTGGCCACTGGAACAGTCAATACTATTCAAAGTGGTTATAAAAGATTACTTGCGAAAGCAAATCCTATTCATGCACTACAAATTCATGGTGAACTTATATACGCAGCTGGTTCTTTCTTGGATGGTTCTTCTTTAAAGTTCCGATTACAGTATGGTTGGATCACTGCAAACTGGATCTGA 3783 0.4489 MTTVAVTTRSQILRHTAAFTSSVLSQPELRRRLIATLLRDTPISDEKHLKLAADTLESAISFASPALRTSSLSLLEKLLFPLPDFALSSLLLSLAHAIRNRPTESATSLLQIFHSNKNNNASLARSEIAPALYERLFSPHLFPVFRWFDEQRTKILSSSPSTSSRENDYSVSEEYSVVLPCAKVLSKMSEEQAGKLREVEREYEEVLDENCRVLAEYFKEVLVKENSDAGISPPSLILKSAAEGGGRENRTEEMTQMSVLENGRYNPIWSEREASVDFLSPGSSRRSPQTPFYPQRVFSRILNPKNPSKNWTTPVHLNTTPDADFSSEESLLSSSSDSEAENEEKDTTIALLEPRQSQIQEQMQTFFKQSRDSPDYPMADFDNPLNGVGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVQPPYESPYEDAEAAVQSTTPSTSPNSVIIQATVDGMMSELRCAINNLYMSEILKESETAVLQIEKFWRGVNLGVDIHRMLAKPAIINGFMEILFNSVEAQVLQAAVFLLAEMGSRDNSVIETLTRVKTDVECIIALFKNGLTEAVVLLHLLNPPITSLTEMAIVESLITVLNTKEEELVAMCLKPKTAAMLLLARITGSSEEIIASSVVNTLFSGNVIGTIVSSLGADLAKERIAAVEILLRCMEEDGTCRSNIADKAELSPLMETLIGADDGERFKIIQFFAELVKLNRRTFTEQILHIIKEQGPFSTMHTLLIYLQAALHDHCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNTDFPVTQLAAADTIMSLQGSFDFSGNPLIREVLLKRAGIDKSSRSLVLVDHQISNSSPEIDITPEEEKAADDWERRIAYILVSHEFGTIFEALADGMKSRNPELRSACFLSATWLTYMLTILPDTGIQVPARACLLKQFIAKLNSARDVEDRILSMVALNSFLHFPEGLGDLTSYTKDILKGLRELKRSCPLASKMLKSLVEENESKSDIWIHKELIKQDCSENGEVLSVICFKDKKISGHTDGTIKVWTLKNNLFHLLQEIQEHTKAVTDLVISESGDRLYSGSLDRTSKVWSIGKAAIHCVQVYDMKDQIHNLVVTDSLTCFVSQGTGVKVQSLNGESKLLNSSKYVKCLAHVNGKLYCGCRDSSVQEIHLATGTVNTIQSGYKRLLAKANPIHALQIHGELIYAAGSFLDGSSLKFRLQYGWITANWI* 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04687 1260 Gene3D - 1038 1245 IPR015943 GO:0005515
Phac2g04687 1260 Pfam U-box domain 394 464 IPR003613 GO:0004842|GO:0016567
Phac2g04687 1260 Gene3D - 538 1015 IPR011989 -
Phac2g04687 1260 SUPERFAMILY RING/U-box 392 468 - -
Phac2g04687 1260 ProSiteProfiles U-box domain profile. 392 467 IPR003613 GO:0004842|GO:0016567
Phac2g04687 1260 SMART Ubox_2 396 460 IPR003613 GO:0004842|GO:0016567
Phac2g04687 1260 SMART WD40_4 1084 1123 IPR001680 GO:0005515
Phac2g04687 1260 SMART WD40_4 1042 1079 IPR001680 GO:0005515
Phac2g04687 1260 SMART WD40_4 1158 1201 IPR001680 GO:0005515
Phac2g04687 1260 MobiDBLite consensus disorder prediction 304 337 - -
Phac2g04687 1260 Pfam WD domain, G-beta repeat 1088 1123 IPR001680 GO:0005515
Phac2g04687 1260 CDD RING-Ubox_PUB 394 446 IPR045210 -
Phac2g04687 1260 ProSiteProfiles Trp-Asp (WD) repeats profile. 1091 1124 IPR001680 GO:0005515
Phac2g04687 1260 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1091 1124 - -
Phac2g04687 1260 SUPERFAMILY ARM repeat 33 1014 IPR016024 -
Phac2g04687 1260 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 1247 - -
Phac2g04687 1260 SUPERFAMILY WD40 repeat-like 1067 1243 IPR036322 GO:0005515
Phac2g04687 1260 Coils Coil 695 715 - -
Phac2g04687 1260 Coils Coil 189 209 - -
Phac2g04687 1260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 469 IPR013083 -
Phac2g04687 1260 MobiDBLite consensus disorder prediction 304 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04687 Phac-Chr2 43992226 44001012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04687 394 471 U-box Gene Family AT1G71020 47.436 4.68e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04687 - - vun:114176884 2159.03