LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac2g04682	ATGTTGGCCTCTAGCTTAAAAGGAAGTTCTATTGCTTCTGTTCTATGTAATTCAGAGGATATTCTTTCTTATTTAATAACCATCTTACAGTTAATTTGGTTGTTCCACAATTTTTCTTCGATGTCTTGGTTGGTTGTCTGTGATCTTTGGTTTTGGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTTCTCAGCCTCAGAAGAATGATGATGCTGAGGCAGAAGCCAAGTCTGAATGCCTTTATGTTAAAGTCAGCATGGAAGGTGCTCCATACTTGAGGAAAGTGGATCTTAATAGTTTTGGCACTTATAAGGAACTCTCTTTGGCACTTGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGCTCTTATGGGGTTTCTTCTGGTCGAGAAAATTTAAGTGAAAGTAGATTGATGGATCTTCTTCATGGTTCAGAATATGTTCTTACCTATGAAGACAGAGATGGAGATTGGATGCTAGTTGGTGATGTTCCCTGGGAGATGTTCACTGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCTCCTAGGGCCGTGGAAAAGTGCAAAAGTCGCAACTAG	627	0.4083	MLASSLKGSSIASVLCNSEDILSYLITILQLIWLFHNFSSMSWLVVCDLWFWAQVVGWPPIRSFRKNSMASQPQKNDDAEAEAKSECLYVKVSMEGAPYLRKVDLNSFGTYKELSLALEKMFSCFTISQCGSYGVSSGRENLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAVEKCKSRN*	209

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac2g04682	208	SUPERFAMILY	CAD & PB1 domains	84	189	-	-
	Phac2g04682	208	ProSiteProfiles	PB1 domain profile.	87	190	IPR000270	GO:0005515
	Phac2g04682	208	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA17	49	195	IPR003311	GO:0005634\|GO:0006355
	Phac2g04682	208	Pfam	AUX/IAA family	53	199	IPR033389	-
	Phac2g04682	208	Gene3D	-	81	202	-	-
	Phac2g04682	208	FunFam	Auxin-responsive protein	82	200	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac2g04682	Phac-Chr2	43947078	43950730	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac2g04682	68	198	B3 DNA Binding Superfamily	AT4G23980	28.777	6.55e-09	53.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX or IAA	Phac2g04682		AUX_IAA	2.1e-78	CL0072

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac2g04682	K14484		-	gmx:100778529	290.041