Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04648 ATGGATAACAACAACGCTAACCATAGGAGTTCAGAGAACAGCGATGATATTGCGGTGTCAATACTGAACAATTTCATAGACTTGGGTGGTTTTGATCTGGACGAGGCTCTTGCGGTGGTGGAGGGAGAATCACGGCGTGTAGTCGCAGCGTGCAAGAGCTACGTCTCCAACTTGCCCACAGTTAACGACGTGAGGAGGGATGAGGTTTGCTCCGTTTGCATGGAGGGGTTCACCCGCCACCACAGGGATGGGGAAAACAAGCGAGTACCGTGCGGCCACGTGTACCACTCCAACTGCATCACCCTATGGTTGGAGCACTGCAACTCTTGCCCCCTTTGCCGCCGCCATATCTCATTCTAA 360 0.5306 MDNNNANHRSSENSDDIAVSILNNFIDLGGFDLDEALAVVEGESRRVVAACKSYVSNLPTVNDVRRDEVCSVCMEGFTRHHRDGENKRVPCGHVYHSNCITLWLEHCNSCPLCRRHISF* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04648 119 Pfam Ring finger domain 70 114 IPR001841 -
Phac2g04648 119 SUPERFAMILY RING/U-box 63 118 - -
Phac2g04648 119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 118 IPR013083 -
Phac2g04648 119 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 47 116 - -
Phac2g04648 119 SMART ring_2 70 113 IPR001841 -
Phac2g04648 119 ProSiteProfiles Zinc finger RING-type profile. 70 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04648 Phac-Chr2 43760717 43761324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04648 22 117 C3H Transcription Factor Family AT5G01980 38.614 7.25e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04648 - K22378 gmx:102669154 174.096