Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04647 ATGGGTCGTCGTAAAATTGAAATGACTGCAGTGAAGGATCCTAATACGAGGCAAGTGACGTTTTCTAAGCGTCGAGCAGGTTTATTCAAAAAGGCGAATGAATTATCTATACTGTGTGGTGCAGAAATTGCCATTGTTGTGTTCTCAATTGGAAACAGACCTTACTCTTTTGGGCACCCAGGTGTTGATGTTGTTGCAGCCAAATTTCTTCAACAAGAAATCAAATCAAATGATGTCAAACAAAAGAGTGTAGAAGTTGGTGACATGGATAGGCTGAATCAACAATTGGTAGAGATCCAAGCCCAACTACTTGTGGAGGAGAAGAAGGGCTTAGAGCATGATCAGATACTAAAACAACACTCATTTAAACAATTACAAGATTCGTATTCAGAATTGCAAAGTAGGGTGAAAGATTATATTGATGCCATTGAGGTATCAGAATGTTTGATTCTACTTGCACAACAACCCGTAGTCCAAACAACAAAACAGGTGAAGAAAAGAAGAAAGAATTGA 513 0.384 MGRRKIEMTAVKDPNTRQVTFSKRRAGLFKKANELSILCGAEIAIVVFSIGNRPYSFGHPGVDVVAAKFLQQEIKSNDVKQKSVEVGDMDRLNQQLVEIQAQLLVEEKKGLEHDQILKQHSFKQLQDSYSELQSRVKDYIDAIEVSECLILLAQQPVVQTTKQVKKRRKN* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04647 170 Coils Coil 89 109 - -
Phac2g04647 170 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac2g04647 170 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Phac2g04647 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac2g04647 170 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Phac2g04647 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Phac2g04647 170 Coils Coil 122 142 - -
Phac2g04647 170 PANTHER MADS BOX PROTEIN 3 136 - -
Phac2g04647 170 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac2g04647 170 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac2g04647 170 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac2g04647 170 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04647 Phac-Chr2 43756980 43757696 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04647 1 155 Type I MADS-box Gene Family AT2G34440 36.047 1.49e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac2g04647 SRF-TF 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04647 - - gmx:100791127 227.639