Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04539 ATGGGGATTTGCTTCAGCATTGAAGACAAGAGCCACCTCTCCGTTTCCGATTCCAACGCCAAACCTAAGCCTCCAGTAGGTCAAGAATCTGCCGCTTCGATTGTTTCCATAAACATCAAAGATCTCCGCGAAGGTGCTGGATATAGCAATGTCGATATTTTCACGTACGAGGAACTGAGGCTCGCAACGAAGCATTTTCGTCCCGATTTCATCTTGGGAGAAGGAGGCTTCGGAGTTGTATATAAAGGCGTCATAGACCATAGTGTTAGGTCGGGTTACAAGGCCACTGTGGTCGCCATTAAGGAACTTAATCGCGAAGGATTTCAAGGAGACAGGGAATGGCTCACCGAAGTCAACTATTTAGGTCAATTCAGTCACCCTAATCTGGTGAAGCTCATTGGATATTGCTGTGAGGACGAACACCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCGAGGGGTCTGGCTTTTCTTCATGGTGCAGAAAGACCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGGATTTCAATGCGAAGCTTTCAGACTTTGGTCTTGCAAAGGATGGCCCGATGGGGGATCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATATGCTGCTCCTGAGTATGTCATGACAGGGCATTTGACAGCTCGAAGTGATGTTTATGGTTTTGGGGTGGTGCTACTTGAAATGCTTATTGGTAGAAGGGCACTAGACAAGAGCAGGCCGAGCCGAGAACACAACTTGGTCGAGTGGGCCCGCCCGCTTCTGAATCATAATAAGAAACTTTTGAAAATTTTAGACCCAAGATTAGAGGGACAATATTCAAGTAAAACTGCACTGAAGGTAGCCCATTTAGCATACCAATGTCTTAGCCAAAACCCGAAAGGAAGACCGCTAATGAGCCAAGTTGTTGAAATTCTCGAAAACTTTCAGTCAAGTGGGGAAAATGAGGAAGATCAAATGCTTCAAACTGGCGGTAGCAGTAGTGTAACCCTTTATGAGGTTCCCAAGGGCAGCAATGACACTCCAACTTAA 1143 0.4514 MGICFSIEDKSHLSVSDSNAKPKPPVGQESAASIVSINIKDLREGAGYSNVDIFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDHSVRSGYKATVVAIKELNREGFQGDREWLTEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPRLEGQYSSKTALKVAHLAYQCLSQNPKGRPLMSQVVEILENFQSSGENEEDQMLQTGGSSSVTLYEVPKGSNDTPT* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04539 380 Gene3D Transferase(Phosphotransferase) domain 1 149 366 - -
Phac2g04539 380 SUPERFAMILY Protein kinase-like (PK-like) 48 344 IPR011009 -
Phac2g04539 380 CDD STKc_IRAK 72 346 - -
Phac2g04539 380 Pfam Protein tyrosine and serine/threonine kinase 72 343 IPR001245 GO:0004672|GO:0006468
Phac2g04539 380 MobiDBLite consensus disorder prediction 350 380 - -
Phac2g04539 380 FunFam Probable serine/threonine-protein kinase PBL8 149 361 - -
Phac2g04539 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Phac2g04539 380 ProSiteProfiles Protein kinase domain profile. 66 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac2g04539 380 Gene3D Phosphorylase Kinase; domain 1 41 148 - -
Phac2g04539 380 ProSitePatterns Protein kinases ATP-binding region signature. 72 101 IPR017441 GO:0005524
Phac2g04539 380 FunFam Serine/threonine-protein kinase BIK1 34 148 - -
Phac2g04539 380 PANTHER OS01G0588500 PROTEIN-RELATED 34 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04539 Phac-Chr2 43125013 43130232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04539 54 377 Glycoside Hydrolase AT3G07070 48.624 1.40e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phac2g04539 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04539 - - gmx:100800465 724.931