Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04510 ATGGATGTGCCACAAACTCCAACCCCCTCTCCACATTTGTATCCACAACAACTTCAACTTAAACTTTACCAAGCCTTCATATTCTCCATTCCCATACTCTTTTCCATCATTCTGGTTCTCTTGTTTTACTTGTTCTACCTCAAAAAGAGAGCTGCATCTCTCTCATCACCACCTCTCCACATACTTACCACCACTGCTAATCCTCAAACTACCTATCCTTACCCTTCACAACCTTGCCGATTAGATCTGACAGTACAATTTCTTGACAAACTTCCAAGAATTTTGTTTGATGAGGATTTTGGAACAAGAGATTCAGTATGCTGTGTTTGCCTTGGAGAATTTGAGCTGAAGGAAGAGCTGCTACAAATTCCTTATTGCAAGCATGTGTTTCATATAAGCTGCATATGCAACTGGTTGCAATCAAACTCCACGTGTCCACTTTGTAGATGTTGCATCATTCCCTCTACCAAGTTCCTTAATCCAGCCCCAACTATTGTATCAGACCCACCACAGCAAGGTGGAACTTCAACCTCTTCATCACACATCATCTCAATGCCTCAGTAG 564 0.4184 MDVPQTPTPSPHLYPQQLQLKLYQAFIFSIPILFSIILVLLFYLFYLKKRAASLSSPPLHILTTTANPQTTYPYPSQPCRLDLTVQFLDKLPRILFDEDFGTRDSVCCVCLGEFELKEELLQIPYCKHVFHISCICNWLQSNSTCPLCRCCIIPSTKFLNPAPTIVSDPPQQGGTSTSSSHIISMPQ* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04510 187 PANTHER RING-H2 FINGER PROTEIN ATL16 8 171 IPR044600 GO:0016567|GO:0016740
Phac2g04510 187 Pfam Ring finger domain 107 149 IPR001841 -
Phac2g04510 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 154 IPR013083 -
Phac2g04510 187 SUPERFAMILY RING/U-box 85 160 - -
Phac2g04510 187 SMART ring_2 107 148 IPR001841 -
Phac2g04510 187 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 76 154 - -
Phac2g04510 187 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Phac2g04510 187 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04510 Phac-Chr2 42898314 42900592 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04510 19 167 C3H Transcription Factor Family AT1G33480 43.421 1.11e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04510 K19039 - pvu:PHAVU_002G300500g 337.421